Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9e21
         (328 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0024 + 159839-159923,160395-160442,160884-160895,161347-16...    29   1.1  
04_04_0584 + 26381220-26381232,26381583-26381594,26381921-263820...    29   1.1  
04_03_0363 - 14942195-14942203,14942421-14943417,14944178-14944278     29   1.1  
01_07_0167 - 41613834-41613842,41614060-41615056,41615456-416163...    29   1.1  
03_01_0479 + 3671792-3671844,3671950-3675691,3675815-3675895,367...    27   3.5  

>07_01_0024 +
           159839-159923,160395-160442,160884-160895,161347-161427,
           161530-161675,161918-161965,162054-162203,165647-165706,
           165788-165859,165960-166409,166640-166839,167239-168236,
           168676-168683,169057-169230,169341-169659,169748-169824,
           169897-169966,170040-170111,170204-170418,170540-170665,
           170751-171046,171133-171157,171163-171303,171400-171498,
           171571-171702,171793-171912
          Length = 1407

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -1

Query: 85  KTRKNFVPHYSKFSY-PKLHKCFRSENNS 2
           +TRKNF+P YSK  + P +H    SE  +
Sbjct: 481 RTRKNFIPVYSKTDFCPFIHSTALSEGTN 509


>04_04_0584 +
           26381220-26381232,26381583-26381594,26381921-26382028,
           26382137-26382217,26382320-26382465,26382550-26382624,
           26382709-26382756,26382845-26382994,26383081-26383140,
           26383394-26384274,26384674-26385670,26385887-26385895
          Length = 859

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -1

Query: 85  KTRKNFVPHYSKFSY-PKLHKCFRSENNS 2
           +TRKNF+P YSK  + P +H    SE  +
Sbjct: 555 RTRKNFIPVYSKTDFCPFIHSTALSEGTN 583


>04_03_0363 - 14942195-14942203,14942421-14943417,14944178-14944278
          Length = 368

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -1

Query: 85  KTRKNFVPHYSKFSY-PKLHKCFRSENNS 2
           +TRKNF+P YSK  + P +H    SE  +
Sbjct: 64  RTRKNFIPVYSKTDFCPFIHSTALSEGTN 92


>01_07_0167 -
           41613834-41613842,41614060-41615056,41615456-41616336,
           41616437-41616508,41616590-41616649,41616736-41616885,
           41616974-41617021,41617107-41617181,41617266-41617411,
           41617514-41617594,41617703-41617810,41618046-41618057,
           41618137-41618148,41618499-41618546,41619021-41619105
          Length = 927

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -1

Query: 85  KTRKNFVPHYSKFSY-PKLHKCFRSENNS 2
           +TRKNF+P YSK  + P +H    SE  +
Sbjct: 623 RTRKNFIPVYSKTDFCPFIHSTALSEGTN 651


>03_01_0479 + 3671792-3671844,3671950-3675691,3675815-3675895,
            3675973-3676042,3676157-3676224
          Length = 1337

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -3

Query: 314  STHLLNTN*IIFYYFNYPG*LPSHSLHKDYQ*ASY-PSGTTHD 189
            ST L+  N +IFY F     L  H+L KD +   + P  TT+D
Sbjct: 949  STELILYNILIFYLFRRRHILQVHNLLKDMKSNGFSPDTTTYD 991


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,878,142
Number of Sequences: 37544
Number of extensions: 132995
Number of successful extensions: 279
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)