Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9e19
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    28   1.4  
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    26   4.3  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    26   4.3  
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    26   4.3  
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    25   7.5  
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo...    25   9.9  

>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +2

Query: 380 LERRSDWYRGSDDRSVSGLYGRNDSLHTRKETIRKEDLRVSGHQLPNRTPA---DTVGSR 550
           L RRS   R S +RS S L  R   + +   + R     VSG Q P+ + +   +   S+
Sbjct: 705 LSRRSSTLRPSFERSASSLSVRQSDVVSPAPSTRARGQSVSGQQRPSSSMSLYGEYNKSQ 764

Query: 551 PSSNIQR 571
           P  ++QR
Sbjct: 765 PQLSMQR 771


>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +3

Query: 171 MTNADPS--KGYKGITCFIVERETPGLSVAKPENKLGIRASG 290
           +T ADP   + YK +  F   +  PG  V  P+  + I A G
Sbjct: 117 LTEADPDDVRQYKNLAEFFTRKLKPGARVIDPDAPIVIPADG 158


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 634 AKYLAIAASLTNSWPCSFSLAALYV 560
           + YL++AA L+  W   +SL  LY+
Sbjct: 3   SSYLSLAARLSQCWISPWSLCCLYI 27


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 396 IGIAAQMIGLCQGCMDATIPYTLERKQFGKKIYEFQ 503
           +G+  + I LC G   ATIP  +E K    K  +F+
Sbjct: 90  LGLPNKYIALCLGSHAATIPGCMEYKMIYDKPTDFE 125


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 392 SDWYRGSDDRSVSGLYGRND 451
           S W +G+D  S+SG+ G  D
Sbjct: 16  SGWLQGADTGSISGILGMRD 35


>SPBC56F2.11 |met6||homoserine
           O-acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 489

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 9/97 (9%)
 Frame = +2

Query: 341 WRI-WQRVQVRGWFLERR-SDWYRGSDDRSVSGL-YGRNDSLHT--RKETIRKEDLR--- 496
           W I W   Q +  + + + +D Y G DD+ VSGL   R  +L T   K +  +   R   
Sbjct: 194 WCISWSEAQRQSIYSDPKFNDGYYGIDDQPVSGLGAARMSALLTYRSKCSFERRFARTVP 253

Query: 497 -VSGHQLPNRTPADTVGSRPSSNIQRR*TERTRPRVC 604
             S H  P+R P     S     +        R R C
Sbjct: 254 DASRHPYPDRLPTPLTPSNAHWVVHNEGNRNRRERPC 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,765,953
Number of Sequences: 5004
Number of extensions: 56569
Number of successful extensions: 163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)