Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9e19
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    27   0.12 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   0.66 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.66 
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    22   4.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   6.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   8.1  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 45  EPSSGSDAFALKTVAKKEGEHYIISGSKMWISNS 146
           +P    +AFA    A K  E YI SG+K+ ++ S
Sbjct: 528 DPPENGEAFAQNLYAMKMNETYINSGNKISLATS 561


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 472 NNSERRF-TSFRASATKSHTCRHSWKPP 552
           NN++  F  +    AT ++T R  WKPP
Sbjct: 115 NNADGNFEVTLATKATLNYTGRVEWKPP 142


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 493  TSFRASATKSHTCRHSWKPP 552
            TS R      HT + +WKPP
Sbjct: 981  TSIRVDDLDQHTLKVTWKPP 1000


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 327 RAPSHCRNVPCMCPK 283
           +A  HC  V C+C K
Sbjct: 69  KAGGHCEKVGCICRK 83


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 658 VNVCAISEAKYLAI 617
           +N+CAIS  +YLA+
Sbjct: 154 LNLCAISLDRYLAV 167


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 5/12 (41%), Positives = 11/12 (91%)
 Frame = +3

Query: 201 KGITCFIVERET 236
           +G++C +++RET
Sbjct: 310 EGVSCLVIDRET 321


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,859
Number of Sequences: 438
Number of extensions: 3981
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)