Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9e18
(608 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 293 5e-80
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 291 3e-79
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 129 2e-30
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 129 2e-30
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 103 8e-23
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 103 1e-22
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 88 5e-18
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 85 5e-17
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 78 4e-15
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 51 7e-07
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 51 7e-07
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 51 7e-07
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 43 1e-04
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 43 1e-04
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 43 1e-04
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 42 3e-04
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 42 3e-04
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 42 3e-04
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 42 5e-04
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 42 5e-04
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 40 0.001
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 36 0.023
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 33 0.21
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 31 0.49
AF000264-4|AAC71125.3| 631|Caenorhabditis elegans Hypothetical ... 30 1.5
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 29 2.6
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 29 2.6
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 293 bits (720), Expect = 5e-80
Identities = 151/181 (83%), Positives = 159/181 (87%), Gaps = 8/181 (4%)
Frame = +3
Query: 87 MXNFTVXXIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDXR 266
M NFTV IR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++AGETRFTD R
Sbjct: 1 MVNFTVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTR 60
Query: 267 KDEQXRCITIKSTAISMFFELEXKDLVFITNPDQRE------KSEK--GFLINLIDSPGH 422
KDEQ RCITIKSTAIS+FFELE KDL F+ +Q E K EK GFLINLIDSPGH
Sbjct: 61 KDEQERCITIKSTAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGH 120
Query: 423 VDFSSEVTAALRVTDGALXVVDCVSGVCVQTETVLRQAIAERIKPILFMNKMDRALLELQ 602
VDFSSEVTAALRVTDGAL VVDCVSGVCVQTETVLRQAIAERIKP+LFMNKMDRALLELQ
Sbjct: 121 VDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQ 180
Query: 603 L 605
L
Sbjct: 181 L 181
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 291 bits (713), Expect = 3e-79
Identities = 150/181 (82%), Positives = 158/181 (87%), Gaps = 8/181 (4%)
Frame = +3
Query: 87 MXNFTVXXIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDXR 266
M NFTV IR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++AGETRFTD R
Sbjct: 1 MVNFTVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTR 60
Query: 267 KDEQXRCITIKSTAISMFFELEXKDLVFITNPDQRE------KSEK--GFLINLIDSPGH 422
KDEQ RCITIKSTAIS+FFELE KDL F+ +Q E K EK GFLINLIDSPGH
Sbjct: 61 KDEQERCITIKSTAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGH 120
Query: 423 VDFSSEVTAALRVTDGALXVVDCVSGVCVQTETVLRQAIAERIKPILFMNKMDRALLELQ 602
VDFSSEVTAAL VTDGAL VVDCVSGVCVQTETVLRQAIAERIKP+LFMNKMDRALLELQ
Sbjct: 121 VDFSSEVTAALGVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQ 180
Query: 603 L 605
L
Sbjct: 181 L 181
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 129 bits (311), Expect = 2e-30
Identities = 71/156 (45%), Positives = 99/156 (63%)
Frame = +3
Query: 138 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDXRKDEQXRCITIKSTAISM 317
+IRN+ ++AHVDHGK++ DSLVS +I+ AG+ R+ D R+DEQ R IT+KS+ IS+
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITMKSSGISL 78
Query: 318 FFELEXKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXVVDCVS 497
E LINLIDSPGHVDFS EVT+AL ++D AL ++D +
Sbjct: 79 LCE--------------------PLLINLIDSPGHVDFSGEVTSALILSDIALLLIDVIE 118
Query: 498 GVCVQTETVLRQAIAERIKPILFMNKMDRALLELQL 605
G+C QTE ++RQ I IL +NK+DR +EL++
Sbjct: 119 GICSQTEALIRQVIRNGQAMILVINKIDRLRVELKM 154
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 129 bits (311), Expect = 2e-30
Identities = 71/156 (45%), Positives = 99/156 (63%)
Frame = +3
Query: 138 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDXRKDEQXRCITIKSTAISM 317
+IRN+ ++AHVDHGK++ DSLVS +I+ AG+ R+ D R+DEQ R IT+KS+ IS+
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITMKSSGISL 78
Query: 318 FFELEXKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXVVDCVS 497
E LINLIDSPGHVDFS EVT+AL ++D AL ++D +
Sbjct: 79 LCE--------------------PLLINLIDSPGHVDFSGEVTSALILSDIALLLIDVIE 118
Query: 498 GVCVQTETVLRQAIAERIKPILFMNKMDRALLELQL 605
G+C QTE ++RQ I IL +NK+DR +EL++
Sbjct: 119 GICSQTEALIRQVIRNGQAMILVINKIDRLRVELKM 154
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 103 bits (248), Expect = 8e-23
Identities = 63/163 (38%), Positives = 93/163 (57%), Gaps = 1/163 (0%)
Frame = +3
Query: 120 MMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGI-IAGARAGETRFTDXRKDEQXRCITI 296
+MD +RN+++ H+ HGK+T D L+ + A + RFTD E+ R +I
Sbjct: 125 LMDCPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSI 184
Query: 297 KSTAISMFFELEXKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 476
KS +S I D R KS +L+N+ID+PGHV+FS E+TA+ R+ DG +
Sbjct: 185 KSQPVS------------IVAQDSRSKS---YLLNIIDTPGHVNFSDEMTASYRLADGVV 229
Query: 477 XVVDCVSGVCVQTETVLRQAIAERIKPILFMNKMDRALLELQL 605
+VD GV + TE +R AI ER+ L ++K+DR LLEL+L
Sbjct: 230 VMVDAHEGVMMNTERAIRHAIQERLAVTLCISKIDRLLLELKL 272
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 103 bits (246), Expect = 1e-22
Identities = 63/162 (38%), Positives = 92/162 (56%), Gaps = 1/162 (0%)
Frame = +3
Query: 123 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGI-IAGARAGETRFTDXRKDEQXRCITIK 299
MD +RN+++ H+ HGK+T D L+ + A + RFTD E+ R +IK
Sbjct: 1 MDCPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSIK 60
Query: 300 STAISMFFELEXKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALX 479
S +S I D R KS +L+N+ID+PGHV+FS E+TA+ R+ DG +
Sbjct: 61 SQPVS------------IVAQDSRSKS---YLLNIIDTPGHVNFSDEMTASYRLADGVVV 105
Query: 480 VVDCVSGVCVQTETVLRQAIAERIKPILFMNKMDRALLELQL 605
+VD GV + TE +R AI ER+ L ++K+DR LLEL+L
Sbjct: 106 MVDAHEGVMMNTERAIRHAIQERLAVTLCISKIDRLLLELKL 147
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 87.8 bits (208), Expect = 5e-18
Identities = 60/150 (40%), Positives = 83/150 (55%), Gaps = 2/150 (1%)
Frame = +3
Query: 141 IRNMSVIAHVDHGKSTLTDSLVSKAGII--AGARAGETRFTDXRKDEQXRCITIKSTAIS 314
+RN+ VIAHVD GK+T+T+ L+ AG I AG TD E+ R IT++S A++
Sbjct: 25 LRNIGVIAHVDAGKTTVTERLLYLAGAIHVAGHVDKGNTVTDFLDIERERGITVQSAAVN 84
Query: 315 MFFELEXKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXVVDCV 494
+ + KG INLID+PGHVDF EV +RV DG + V+D
Sbjct: 85 LDW--------------------KGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGS 124
Query: 495 SGVCVQTETVLRQAIAERIKPILFMNKMDR 584
+GV QT TV RQ+ ++ F+NKMD+
Sbjct: 125 AGVQPQTLTVWRQSSKFKLPAHFFINKMDK 154
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 84.6 bits (200), Expect = 5e-17
Identities = 54/147 (36%), Positives = 78/147 (53%)
Frame = +3
Query: 141 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDXRKDEQXRCITIKSTAISMF 320
IRN ++AHVDHGKSTL D L+ G + G+ + D + E+ R IT+K+ ++
Sbjct: 42 IRNFGIVAHVDHGKSTLADRLLEMCGAVP---PGQKQMLDKLQVERERGITVKAQTAAL- 97
Query: 321 FELEXKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXVVDCVSG 500
+G+L+NLID+PGHVDFS+EV+ +L V DG L +V G
Sbjct: 98 -------------------RHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG 138
Query: 501 VCVQTETVLRQAIAERIKPILFMNKMD 581
V QT A + I+ I +NK+D
Sbjct: 139 VQAQTIANFWLAFEKNIQIIPVINKID 165
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 78.2 bits (184), Expect = 4e-15
Identities = 59/148 (39%), Positives = 79/148 (53%)
Frame = +3
Query: 141 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDXRKDEQXRCITIKSTAISMF 320
IRN+ + AH+D GK+T+T+ ++ AG I E R KD+ A F
Sbjct: 44 IRNIGISAHIDSGKTTVTERILYYAGRIDSMH--EVR----GKDDVG--------ATMDF 89
Query: 321 FELEXKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXVVDCVSG 500
+LE + + I + G IN+ID+PGHVDF+ EV ALRV DGA+ V+ V G
Sbjct: 90 MDLERQRGITIQSA-ATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCGVGG 148
Query: 501 VCVQTETVLRQAIAERIKPILFMNKMDR 584
V QT TV RQ + I F+NKMDR
Sbjct: 149 VQSQTFTVNRQLARYNVPFICFVNKMDR 176
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 50.8 bits (116), Expect = 7e-07
Identities = 44/148 (29%), Positives = 64/148 (43%), Gaps = 3/148 (2%)
Frame = +3
Query: 147 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDXRKDEQXRCITIKSTAISMFFE 326
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI + F
Sbjct: 51 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINA------FH 104
Query: 327 LEXKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXVVDCVSGVC 506
LE E +++ + ID PGH D+ + +GA+ VV G
Sbjct: 105 LEY------------ETAKRHYA--HIDCPGHADYIKNMITGAAQMEGAILVVAATDGPM 150
Query: 507 VQTETVL---RQAIAERIKPILFMNKMD 581
QT L RQ ++FMNK+D
Sbjct: 151 PQTREHLLLARQVGVPLDNIVVFMNKVD 178
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 50.8 bits (116), Expect = 7e-07
Identities = 44/148 (29%), Positives = 64/148 (43%), Gaps = 3/148 (2%)
Frame = +3
Query: 147 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDXRKDEQXRCITIKSTAISMFFE 326
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI + F
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINA------FH 105
Query: 327 LEXKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXVVDCVSGVC 506
LE E +++ + ID PGH D+ + +GA+ VV G
Sbjct: 106 LEY------------ETAKRHYA--HIDCPGHADYIKNMITGAAQMEGAILVVAATDGPM 151
Query: 507 VQTETVL---RQAIAERIKPILFMNKMD 581
QT L RQ ++FMNK+D
Sbjct: 152 PQTREHLLLARQVGVPLDNIVVFMNKVD 179
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 50.8 bits (116), Expect = 7e-07
Identities = 44/148 (29%), Positives = 64/148 (43%), Gaps = 3/148 (2%)
Frame = +3
Query: 147 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDXRKDEQXRCITIKSTAISMFFE 326
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI + F
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINA------FH 105
Query: 327 LEXKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXVVDCVSGVC 506
LE E +++ + ID PGH D+ + +GA+ VV G
Sbjct: 106 LEY------------ETAKRHYA--HIDCPGHADYIKNMITGAAQMEGAILVVAATDGPM 151
Query: 507 VQTETVL---RQAIAERIKPILFMNKMD 581
QT L RQ ++FMNK+D
Sbjct: 152 PQTREHLLLARQVGVPLDNIVVFMNKVD 179
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 43.2 bits (97), Expect = 1e-04
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 1/123 (0%)
Frame = +3
Query: 135 RNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDXRKDEQXRCITIKSTAIS 314
+++ N+ V+ HVD GKSTL L+ ++ ++R D K E R
Sbjct: 168 KDLINLIVVGHVDAGKSTLMGHLLHDLEVV------DSRTIDKFKHEAARNGKASFAYAW 221
Query: 315 MFFELEXKDLVFITNPDQREKSEKGFL-INLIDSPGHVDFSSEVTAALRVTDGALXVVDC 491
+ E E + +T R E I L+D+PGH DF S + D A+ VV+
Sbjct: 222 VLDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNA 281
Query: 492 VSG 500
+G
Sbjct: 282 TTG 284
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 43.2 bits (97), Expect = 1e-04
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 1/123 (0%)
Frame = +3
Query: 135 RNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDXRKDEQXRCITIKSTAIS 314
+++ N+ V+ HVD GKSTL L+ ++ ++R D K E R
Sbjct: 186 KDLINLIVVGHVDAGKSTLMGHLLHDLEVV------DSRTIDKFKHEAARNGKASFAYAW 239
Query: 315 MFFELEXKDLVFITNPDQREKSEKGFL-INLIDSPGHVDFSSEVTAALRVTDGALXVVDC 491
+ E E + +T R E I L+D+PGH DF S + D A+ VV+
Sbjct: 240 VLDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNA 299
Query: 492 VSG 500
+G
Sbjct: 300 TTG 302
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 43.2 bits (97), Expect = 1e-04
Identities = 26/66 (39%), Positives = 38/66 (57%)
Frame = +3
Query: 387 GFLINLIDSPGHVDFSSEVTAALRVTDGALXVVDCVSGVCVQTETVLRQAIAERIKPILF 566
GFLI ID+PGH FS+ T + D A+ VVD + G+ QT L+ I + ++
Sbjct: 550 GFLI--IDTPGHESFSNLRTRGSSLCDFAILVVDIMHGLEPQTIESLKLLIKGKTPFVIA 607
Query: 567 MNKMDR 584
+NK+DR
Sbjct: 608 LNKIDR 613
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 41.9 bits (94), Expect = 3e-04
Identities = 38/126 (30%), Positives = 61/126 (48%)
Frame = +3
Query: 123 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDXRKDEQXRCITIKS 302
M K++ N+ VI HVD GKST T L+ K G I R E +F ++ ++ + K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF--EKEAQEMGKGSFKY 56
Query: 303 TAISMFFELEXKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXV 482
+ + E + + I + ++ K + I +ID+PGH DF + D A+ V
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETAK-YYITIIDAPGHRDFIKNMITGTSQADCAVLV 115
Query: 483 VDCVSG 500
V C +G
Sbjct: 116 VACGTG 121
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 41.9 bits (94), Expect = 3e-04
Identities = 38/126 (30%), Positives = 61/126 (48%)
Frame = +3
Query: 123 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDXRKDEQXRCITIKS 302
M K++ N+ VI HVD GKST T L+ K G I R E +F ++ ++ + K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF--EKEAQEMGKGSFKY 56
Query: 303 TAISMFFELEXKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXV 482
+ + E + + I + ++ K + I +ID+PGH DF + D A+ V
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETAK-YYITIIDAPGHRDFIKNMITGTSQADCAVLV 115
Query: 483 VDCVSG 500
V C +G
Sbjct: 116 VACGTG 121
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 41.9 bits (94), Expect = 3e-04
Identities = 38/126 (30%), Positives = 61/126 (48%)
Frame = +3
Query: 123 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDXRKDEQXRCITIKS 302
M K++ N+ VI HVD GKST T L+ K G I R E +F ++ ++ + K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF--EKEAQEMGKGSFKY 56
Query: 303 TAISMFFELEXKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXV 482
+ + E + + I + ++ K + I +ID+PGH DF + D A+ V
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETAK-YYITIIDAPGHRDFIKNMITGTSQADCAVLV 115
Query: 483 VDCVSG 500
V C +G
Sbjct: 116 VACGTG 121
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 41.5 bits (93), Expect = 5e-04
Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 1/146 (0%)
Frame = +3
Query: 147 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDXRKDEQXRCITIKSTAISMFFE 326
N+ I H+DHGK+TLT ++ A+ + D K+E+ R ITI I +E
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITINVAHIG--YE 104
Query: 327 LEXKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXVVDCVSGVC 506
+P +R + D PGH DF + D A+ V+ GV
Sbjct: 105 ----------SPLRR--------YSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVM 146
Query: 507 VQTETVLRQAIAERIKPI-LFMNKMD 581
QT+ L A +K + +F+NK D
Sbjct: 147 EQTKEHLILAKQVGVKNMAIFINKAD 172
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 41.5 bits (93), Expect = 5e-04
Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 1/146 (0%)
Frame = +3
Query: 147 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDXRKDEQXRCITIKSTAISMFFE 326
N+ I H+DHGK+TLT ++ A+ + D K+E+ R ITI I +E
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITINVAHIG--YE 104
Query: 327 LEXKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXVVDCVSGVC 506
+P +R + D PGH DF + D A+ V+ GV
Sbjct: 105 ----------SPLRR--------YSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVM 146
Query: 507 VQTETVLRQAIAERIKPI-LFMNKMD 581
QT+ L A +K + +F+NK D
Sbjct: 147 EQTKEHLILAKQVGVKNMAIFINKAD 172
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 40.3 bits (90), Expect = 0.001
Identities = 37/123 (30%), Positives = 59/123 (47%)
Frame = +3
Query: 123 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDXRKDEQXRCITIKS 302
M K++ N+ VI HVD GKST T L+ K G I R E +F ++ ++ + K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF--EKEAQEMGKGSFKY 56
Query: 303 TAISMFFELEXKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXV 482
+ + E + + I + ++ K + I +ID+PGH DF + D A+ V
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETAK-YYITIIDAPGHRDFIKNMITGTSQADCAVLV 115
Query: 483 VDC 491
V C
Sbjct: 116 VAC 118
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 38.7 bits (86), Expect = 0.003
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Frame = +3
Query: 378 SEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXVVDCVSGVCVQTETVLRQAIAERIKP 557
S G + LID PGH V AA V D A+ ++D V+G +Q +T +A + P
Sbjct: 68 SLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAG--IQPQTAEHLLLASKFCP 125
Query: 558 ---ILFMNKMDRA 587
I+ +NK D A
Sbjct: 126 NRVIIVLNKCDLA 138
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 35.9 bits (79), Expect = 0.023
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = +3
Query: 384 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXVVDCVSGVCVQTETVLRQAIAERIKPIL 563
KG + +D+PGH F+S + D + VV GV QT ++ A ++ ++
Sbjct: 202 KGRRVTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKEQTAQSIKFAKDANVQLVV 261
Query: 564 FMNKMDR 584
+NK+D+
Sbjct: 262 AVNKIDK 268
Score = 31.5 bits (68), Expect = 0.49
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +3
Query: 126 DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 251
D +R ++++ HVDHGK+TL D++ + I AG G T+
Sbjct: 151 DLERRPPIVTIMGHVDHGKTTLLDAM-RNSQIAAGEFGGITQ 191
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 32.7 bits (71), Expect = 0.21
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 123 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 218
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 31.5 bits (68), Expect = 0.49
Identities = 18/68 (26%), Positives = 28/68 (41%)
Frame = -2
Query: 544 SAIA*RSTVSVCTHTPDTQSTTXRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRW 365
+AI ++ + T +T STT P +T + + +E T S+ P L RW
Sbjct: 691 TAIFAEASTGIITTDEETTSTTSTTPEITSTKEIVTESAITQTSVSVVESSTPRQLPERW 750
Query: 364 SGFVMNTK 341
V K
Sbjct: 751 KAIVNKFK 758
>AF000264-4|AAC71125.3| 631|Caenorhabditis elegans Hypothetical
protein F43E2.3 protein.
Length = 631
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 496 DTQSTTXRAPSVTRSAAVTSEEKSTCPGESIK 401
D+ +T R+P TRS ++TS + C G+ I+
Sbjct: 174 DSANTILRSPYSTRSDSITSVDSGQCSGDQIE 205
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 174 DRRGRSQTCCGYSASCPSSXG 112
DRRGR TC G CP G
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein (
C.elegans RNA polymeraseII largest subunit (ama-1 IV)
gene, complete cds. ).
Length = 1859
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 174 DRRGRSQTCCGYSASCPSSXG 112
DRRGR TC G CP G
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,327,890
Number of Sequences: 27780
Number of extensions: 231684
Number of successful extensions: 726
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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