Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9e18
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    38   6e-05
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    38   8e-05
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    37   2e-04
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    27   0.11 
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    27   0.11 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.44 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   3.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.1  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   4.1  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   7.1  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   7.1  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 38.3 bits (85), Expect = 6e-05
 Identities = 21/73 (28%), Positives = 36/73 (49%)
 Frame = +3

Query: 381 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALXVVDCVSGVCVQTETVLRQAIAERIKPI 560
           E G  +  +D+PGH  F S       +TD  + VV    GV  QT   +  A   ++  I
Sbjct: 190 ESGERVTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDGVKEQTLQSIEMAKDAKVPII 249

Query: 561 LFMNKMDRALLEL 599
           + +NK+D+  +++
Sbjct: 250 VAINKIDKPNIDI 262



 Score = 29.5 bits (63), Expect = 0.027
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = +3

Query: 150 MSVIAHVDHGKSTLTDSL 203
           ++++ HVDHGK+TL D+L
Sbjct: 148 VTIMGHVDHGKTTLLDAL 165


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 37.9 bits (84), Expect = 8e-05
 Identities = 35/126 (27%), Positives = 60/126 (47%)
 Frame = +3

Query: 123 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDXRKDEQXRCITIKS 302
           M K++   N+ VI HVD GKST T  L+ K G I   R  E +F   ++ ++    + K 
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF--EKEAQEMGKGSFKY 56

Query: 303 TAISMFFELEXKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXV 482
             +    + E +  + I     + ++ K + + +ID+PGH DF   +       D A+ +
Sbjct: 57  AWVLDKLKAERERGITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLI 115

Query: 483 VDCVSG 500
           V   +G
Sbjct: 116 VAAGTG 121


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 36.7 bits (81), Expect = 2e-04
 Identities = 34/121 (28%), Positives = 58/121 (47%)
 Frame = +3

Query: 123 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDXRKDEQXRCITIKS 302
           M K++   N+ VI HVD GKST T  L+ K G I   R  E +F   ++ ++    + K 
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF--EKEAQEMGKGSFKY 56

Query: 303 TAISMFFELEXKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXV 482
             +    + E +  + I     + ++ K + + +ID+PGH DF   +       D A+ +
Sbjct: 57  AWVLDKLKAERERGITIDIALWKFETAK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLI 115

Query: 483 V 485
           V
Sbjct: 116 V 116


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 390 FLINLIDSPGHVDFSSEVTAALRVTDGALXVVDCVSG 500
           + + +ID+PGH DF   +       D A+ +V   +G
Sbjct: 12  YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 48


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 390 FLINLIDSPGHVDFSSEVTAALRVTDGALXVVDCVSG 500
           + + +ID+PGH DF   +       D A+ +V   +G
Sbjct: 28  YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 64


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 147 NMSVIAHVDHGKSTLTDSL 203
           N+  I HV HGKST+  ++
Sbjct: 44  NIGTIGHVAHGKSTIVKAI 62


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 273 EQXRCITIKSTAISMFF 323
           E   C T+K +A+ M+F
Sbjct: 684 ENLTCATVKGSAVDMYF 700


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +1

Query: 4   FFFFFSKRTPLLAYGSW 54
           +++FF++RT    +G W
Sbjct: 475 YYYFFTQRTSTNLWGEW 491


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +3

Query: 480 VVDCVSGVCVQTETVLRQAIAERIKPILFMNKMDRALLEL 599
           + DC    C+Q    +R+ +    K ++F+  ++R   EL
Sbjct: 1   MADCPYARCIQERRHIRRELLRWTKNMVFVVGLERVAEEL 40


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = -1

Query: 530 TQYCFSLYTHTRHTVNNXKGSISDXECSCYFRREINVSR*VNQV 399
           T  C S Y  +RH   N   +  +  CS    RE    R  +Q+
Sbjct: 227 TSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKDRRYDQL 270


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 309 ISMFFELEXKDLVFITNPDQREKSEKGFLI 398
           ++MF+     D+  I+N +Q + S  GF I
Sbjct: 527 LNMFYNNFNSDIKSISNNEQVKVSALGFFI 556


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 309 ISMFFELEXKDLVFITNPDQREKSEKGFLI 398
           ++MF+     D+  I+N +Q + S  GF I
Sbjct: 527 LNMFYNNFNSDIKSISNNEQVKVSALGFFI 556


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,809
Number of Sequences: 438
Number of extensions: 2615
Number of successful extensions: 21
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)