Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9e16
         (405 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    22   2.6  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   4.6  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   6.1  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   6.1  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    20   8.0  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    20   8.0  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    20   8.0  

>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +1

Query: 61  EFHLPGTKFSRCHSPTRWTEGRAP 132
           +FH+PG   +  +SP  W     P
Sbjct: 205 DFHIPGGGIAAENSPLYWGGADTP 228


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 401 FFDNAMIIIRNKLNITTFHI 342
           F DN   I+  K N+T  H+
Sbjct: 233 FLDNVDTIMYEKTNVTFVHL 252


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 9/38 (23%), Positives = 16/38 (42%)
 Frame = +2

Query: 116 QKAEPQSSGPNFVKFATKVANLSKLGPPKPTPTTSEAP 229
           Q  +P     + +    + AN+ + GPP   P   + P
Sbjct: 177 QHHQPHHQQQHMMYGGQQGANMHQQGPPHQQPPIQQQP 214


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 9/38 (23%), Positives = 16/38 (42%)
 Frame = +2

Query: 116 QKAEPQSSGPNFVKFATKVANLSKLGPPKPTPTTSEAP 229
           Q  +P     + +    + AN+ + GPP   P   + P
Sbjct: 179 QHHQPHHQQQHMMYGGQQGANMHQQGPPHQQPPIQQQP 216


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 113 GQKAEPQSSGPNFVK 157
           G  AE  +SGP FV+
Sbjct: 13  GASAEDDTSGPVFVR 27


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 173 ANLSKLGPPKPTPTTSEAPK 232
           AN++    P+PT +T+  P+
Sbjct: 392 ANMNSYSVPEPTISTTPRPE 411


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +2

Query: 188 LGPPKPTPTTSEAPKDKMDF 247
           +GPP P  + +  P  K  F
Sbjct: 7   IGPPTPHESNTSTPVSKSAF 26


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,729
Number of Sequences: 336
Number of extensions: 2607
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8752267
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)