Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9e08
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC725.09c |hob3||BAR adaptor protein Hob3|Schizosaccharomyces ... 64 2e-11
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 31 0.14
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei... 30 0.25
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 29 0.58
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 28 1.0
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz... 27 3.1
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 3.1
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 26 4.1
SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 26 5.4
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 26 5.4
SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos... 26 5.4
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 5.4
SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p... 25 7.2
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 25 9.5
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 9.5
>SPBC725.09c |hob3||BAR adaptor protein Hob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 264
Score = 63.7 bits (148), Expect = 2e-11
Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 4/146 (2%)
Frame = +2
Query: 167 QKHAGRAKEKLLQNLGKVDRTLDDIFEEHLQNFNRQHQQSTRLQKEFNNYIRCIRAAQTA 346
+K RA ++ G V+RT+D FE + + + +LQKE Y+ +RA +
Sbjct: 7 KKAVNRAGTSVMMKTGHVERTVDREFETEERRYRTMESAAKKLQKEAKGYLDALRAMTAS 66
Query: 347 SKSLMEAITEVYESGWSGHDLLYVQAQNMEVLWQDFSHKLG----DQVLIPLNTYTNQFP 514
+ I Y S + Q +E L D +L VL P++ + + FP
Sbjct: 67 QTRIANTIDAFYGDAGSKDGVSAYYRQVVEDLDADTVKELDGPFRTTVLDPISRFCSYFP 126
Query: 515 EVRKKIEKRGRKLVDYDSQRHSFQNL 592
++ I KR KL+D+D+ R Q L
Sbjct: 127 DINAAITKRNHKLLDHDAMRAKVQKL 152
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 31.1 bits (67), Expect = 0.14
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Frame = +2
Query: 113 EKVIEMAESKGALIAKTVQKHAGRAK--EKLLQNLGKVDRTLDDIFEEHLQNFNRQHQQS 286
EK+IE+ E+ L A ++ RA+ E+LL ++D IFEEH + + HQ +
Sbjct: 464 EKLIELVETTIDLEALDSHQYIIRAEFDEELLDLRQRLDELQHSIFEEHKRVGSDLHQDT 523
Query: 287 -TRLQKEFNN-YIRCIRAAQTASKSL 358
+L E ++ Y C+R +T + L
Sbjct: 524 EKKLHLEQHHLYGWCLRLTRTEAGCL 549
>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 30.3 bits (65), Expect = 0.25
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 515 EVRKKIEKRGRKLVDYDSQRHSFQNLQANAAKR-RDDVKVTKGR 643
EV+ +I + + D ++Q HSFQ + KR +D TK R
Sbjct: 244 EVKNRISRLQKTFADLENQHHSFQQICQTLRKRLENDSSTTKQR 287
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 29.1 bits (62), Expect = 0.58
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +2
Query: 428 NMEVLWQDFSHKLGDQVLIPLNTYTNQFPEVRKKIEKRGRKLVDYDSQRHS--FQNLQAN 601
N +L Q+ ++ VL + + F EVR +RG V+YDS R + +N
Sbjct: 173 NKVLLLQNIPQEVNADVLTQIFEAFSGFQEVRMVPGRRGIAFVEYDSDREATVAKNGTTG 232
Query: 602 AAKRRDDVKVTKGRE 646
+ + +KVT R+
Sbjct: 233 MSLSGNQIKVTFARK 247
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 161 FSRLTHLYFQPFQSLFHYQMSKSRYTINLQPN 66
F L+H F PF LF Y S YT+ + P+
Sbjct: 462 FFLLSHEMFNPFYCLFEYS-SVDNYTLQINPH 492
>SPCC794.08 |||HEAT repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 798
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = +2
Query: 443 WQDFSHKLGDQVLIPLNTYTNQFPEVRKKIEKRGRKLVDYDSQRH 577
W+ ++ ++V++PL+ N+ E K+ +L+ + RH
Sbjct: 635 WEKLTNASTEEVMLPLDMVVNELLEKSPKVFPEDSRLLFAEQSRH 679
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 248 EHLQNFNRQHQQSTRLQKEFNNYIRCIRAAQTASKSLMEAITEVY 382
EH+QN N QH Q L K ++ R + S+ ++A+TE +
Sbjct: 628 EHVQNSNEQHLQPGLLNKVSKSFDSVHR--RNLSQDSLDAMTEQF 670
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 176 HVFALFSRLTHLYFQP 129
H+ LFS + HL+FQP
Sbjct: 699 HIDLLFSNMKHLFFQP 714
>SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 156
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 204 RTWARSTELSMIYSKSTYRISTDSTSSPPG 293
++W+ E YS + Y+ ST TS+P G
Sbjct: 82 KSWSDGVETIFPYSYTEYQPSTTYTSAPAG 111
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 5.4
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Frame = +2
Query: 257 QNFNRQHQQSTRLQKEFNNYIRCI-----RAAQTASKSL--MEAITEVYESGWSGHDLLY 415
+ + ++++ + EF I C+ RA +T + +EA E+Y SG S DLL+
Sbjct: 192 ERIQQMRNEASQRRFEFKTTIECLEESSNRAIETYENRIAELEAQLEMYMSGKSEDDLLF 251
Query: 416 VQAQNME 436
Q +
Sbjct: 252 SLQQERD 258
>SPCC16C4.17 |mug123||meiotically upregulated gene
Mug123|Schizosaccharomyces pombe|chr 3|||Manual
Length = 235
Score = 25.8 bits (54), Expect = 5.4
Identities = 17/69 (24%), Positives = 31/69 (44%)
Frame = +1
Query: 247 RAPTEFQPTAPAVHQVAEGVQQLHKMYTSGADSFEVADGSDHGGLRERLVRSRPAVRPSS 426
RA + TAP++ ++ + + T+ +D FE GS ++ LV R + SS
Sbjct: 150 RASSTHSGTAPSIMGMSIHSRADSRAETTQSDGFESRSGSPTHDIQSYLVNRRSSSSESS 209
Query: 427 EHGGPLAGL 453
+ G+
Sbjct: 210 DEDSAEEGM 218
>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 25.8 bits (54), Expect = 5.4
Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 13/131 (9%)
Frame = +2
Query: 242 FEEHLQNFNRQHQQSTRLQKEFNN-YIRCIRAAQTASKSLMEAITEVYESGWSG---HDL 409
FE L N H + +++Q+E + + + +R + +S +EA+ + W +
Sbjct: 225 FESSLNEANELHGKLSKIQQEQEHLFEQRLREKVSEMESKLEALLIARDEKWQSAFESEK 284
Query: 410 LYVQAQNMEVLWQD-------FSHKLGDQVLIPLNTYTN-QFPEVRKKIEK-RGRKLVDY 562
L +Q + L Q+ F KL +++ T ++ ++E+ RG +L
Sbjct: 285 LRLQKLHEARLQQELFKLASVFESKLKNELTEQAITLEKLHLQSIKAQVEQERGSRLGRL 344
Query: 563 DSQRHSFQNLQ 595
R+SFQ LQ
Sbjct: 345 QELRNSFQQLQ 355
>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 264
Score = 25.4 bits (53), Expect = 7.2
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = +3
Query: 240 YSKSTYRISTDSTSSPPGCRRS 305
+++ST + D+++SPP CR++
Sbjct: 73 HNESTTSVGHDNSNSPPKCRKT 94
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 25.0 bits (52), Expect = 9.5
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Frame = +2
Query: 146 ALIAKTVQKHAGRAKEKLLQNLGKV-DRTLDDIFEEHLQNFNRQHQQSTRLQKEFNNYIR 322
ALI T Q G E ++ KV L D+F + + Q ++S + E NY R
Sbjct: 105 ALIVITSQ---GERTESFSNDILKVLSEWLTDLFTI-IDDMRAQSRKSFKGSAELRNYTR 160
Query: 323 CIRAAQTASKSLMEAITEVYESGWSGHDLLYVQAQNMEVLW 445
C R ++ +T ++ G++ D + V + +W
Sbjct: 161 CFR-------QIILLLTNMFRVGFNLFDEMEVSSMLANCVW 194
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/59 (20%), Positives = 30/59 (50%)
Frame = +2
Query: 110 NEKVIEMAESKGALIAKTVQKHAGRAKEKLLQNLGKVDRTLDDIFEEHLQNFNRQHQQS 286
N K ++ ++ K H G + ++++LG V ++ +DI HL ++ ++ + +
Sbjct: 635 NTKYKRISRNRSTKNVKRDGDHNGDDSDYVIRSLGDVLQSDEDIERWHLYDYTKEEEDT 693
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,734,324
Number of Sequences: 5004
Number of extensions: 57357
Number of successful extensions: 239
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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