Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9e07
         (646 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          26   0.31 
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   3.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   5.0  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    21   6.6  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    21   6.6  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   8.7  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 294 LVSSKWFFPRWAQAL 338
           L+  K+FFPRW Q L
Sbjct: 646 LILDKFFFPRWRQTL 660


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 631 NFPITHSIACLPLPA 587
           N P+TH+IA  P P+
Sbjct: 335 NLPLTHNIAHNPYPS 349


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 380 SKPNTATDDFKNNKPNILSLH 442
           S  NT+T    +NKPN   L+
Sbjct: 427 SNTNTSTSSTNSNKPNSSDLN 447


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 363 HNIFLQYQLAPGPIVEKTIWN*LIYEYEVHHL 268
           +++  Q    P PIV   + N L Y + ++HL
Sbjct: 262 NSVLFQNVYKPLPIVLSIVKNCLSYCFNLYHL 293


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 363 HNIFLQYQLAPGPIVEKTIWN*LIYEYEVHHL 268
           +++  Q    P PIV   + N L Y + ++HL
Sbjct: 262 NSVLFQNVYKPLPIVLSIVKNCLSYCFNLYHL 293


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 15/63 (23%), Positives = 28/63 (44%)
 Frame = -2

Query: 201 MLLEQLFPMDG*MCVLMSKSSCFFLISNANCSIEIRISKTKNYIYLSHY*HYTRITPSLS 22
           +LL+  + ++  M + +S SS F    +  C I+       N  Y+  Y    +  PS  
Sbjct: 397 LLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPIKFGRKADPNGDYIRKYLPVLKNMPSQY 456

Query: 21  LHQ 13
           +H+
Sbjct: 457 IHE 459


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,439
Number of Sequences: 336
Number of extensions: 3616
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16552695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)