Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9d17
(645 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 31 0.14
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 29 0.76
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 1.8
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 27 3.1
SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|... 26 4.0
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 26 5.3
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 25 9.3
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 25 9.3
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 25 9.3
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 31.1 bits (67), Expect = 0.14
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +3
Query: 294 PKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSS 437
P P ++P V P +PV P T++ + P ++P +VP S
Sbjct: 221 PPQPAVAPSVSAVVPNLPVHPATAINAQSQSGNPLSNPLFQPSNVPQS 268
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 28.7 bits (61), Expect = 0.76
Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +3
Query: 276 VKHQRWPKPPELSPIYLPVSPVMPVQPLT---SLTLTQTASGPETSPAS 413
VKH P PP P+ +SP MP PLT S T S PE+ P S
Sbjct: 740 VKHH--PPPP---PVRSSISPSMPPAPLTHANSSTPMNYVSQPESPPQS 783
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +2
Query: 113 NQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEI-LKDMASQGDYASQ 280
NQ S D+D+ ASS++S A D+D N+ +A GD +SQ
Sbjct: 3 NQSSSGSNTSDLDEESASSLVSSAASPFIDSDLETPRPNISRASTGQLAEDGDTSSQ 59
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.6 bits (56), Expect = 3.1
Identities = 21/87 (24%), Positives = 34/87 (39%)
Frame = +3
Query: 192 TSMTLTKASPSSTFKRS*RTWPARAIMQVKHQRWPKPPELSPIYLPVSPVMPVQPLTSLT 371
+S +KA+ FK + ++ V+ P PP + P LP P M + +
Sbjct: 390 SSAVFSKATAEPAFKSAMAIPDMPSMPHVQGFPAPFPPFMMP-GLPQMPPMMMNAIAGQV 448
Query: 372 LTQTASGPETSPASDNLSVPSSDTWDK 452
+ P T+ N SVP + K
Sbjct: 449 YHNNRNPPRTNSRPSNASVPPPSSLHK 475
>SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 26.2 bits (55), Expect = 4.0
Identities = 19/74 (25%), Positives = 34/74 (45%)
Frame = +2
Query: 83 SAYAAPSVTINQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEILKDMASQ 262
S +PSV+I +EIP + + + A DY+ T I++V ++ + S
Sbjct: 80 SVEISPSVSIQNRETDEIPSFLTSALQDLLNALAVDYLKFTPSKAWIIHVDAVV--ILSS 137
Query: 263 GDYASQASAVAQTA 304
Y + SA++ A
Sbjct: 138 SPYENILSALSLAA 151
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 5.3
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +3
Query: 255 PARAIMQVKHQRWPKPPELSPIYLP--VSPVMPVQPLTSLTLTQTASGPETSPASDNLSV 428
P +M + +Q P + P +PV P QPL L + T P + + L++
Sbjct: 258 PFEQMMAMTNQGMSVSPGVETTSSPFFTAPVEPNQPLQPLRPSMTGPVPSSMGSEATLNM 317
Query: 429 PSS 437
PS+
Sbjct: 318 PST 320
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 25.0 bits (52), Expect = 9.3
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +3
Query: 192 TSMTLTKASPSSTFKRS*RTWPARAIMQVKHQRWPKPPELSPIYLP-VSPVMPVQPLTSL 368
T +T + S KR+ +P K W L+P+ +S + +
Sbjct: 145 TESKMTSVARKSKPKRAGTFYPV-IFFPNKEYLWTGSDSLTPLTSEAISQFLEKPKPKTA 203
Query: 369 TLTQTASGPETSPASDNLSVPSSDT 443
+L + +++P D+LSVPSS++
Sbjct: 204 SLIKAYKMAQSTPDLDSLSVPSSES 228
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.0 bits (52), Expect = 9.3
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Frame = +3
Query: 291 WPKPPELS-PIY-----LPVSPVMPVQPLTSLTLTQTASGPETSP 407
+P P +S P Y +PVSP +PV P +S + P + P
Sbjct: 287 YPHPTGISLPFYPFDSGIPVSPNIPVSPSSSFVPMYPTTFPSSKP 331
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -3
Query: 517 GWS-DRVSELTRVDDELIDKIQVLSHVSE 434
G+S DR+ ELTR+D ++K+ L S+
Sbjct: 901 GYSVDRIWELTRIDKWFLEKLMGLIRTSQ 929
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,558,687
Number of Sequences: 5004
Number of extensions: 50443
Number of successful extensions: 187
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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