Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9d03
         (734 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    25   0.84 
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    25   0.84 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.8  

>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -1

Query: 551 KMTPSYWLSTL*MSIASRYNIYLIFSSSGKYRYKFYNSR 435
           +M P++ +    +   S+Y + +   ++   RYKF+NSR
Sbjct: 1   RMFPAFKVRVSGLDKKSKYILLMDIVAADDCRYKFHNSR 39


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -1

Query: 551 KMTPSYWLSTL*MSIASRYNIYLIFSSSGKYRYKFYNSR 435
           +M P++ +    +   S+Y + +   ++   RYKF+NSR
Sbjct: 1   RMFPAFKVRVSGLDKKSKYILLMDIVAADDCRYKFHNSR 39


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/29 (27%), Positives = 13/29 (44%)
 Frame = +3

Query: 555  LSHAWALRDDVTRLEEQRSRLSRCPLGSG 641
            LS+ W   DD+  +  +   +    LG G
Sbjct: 2630 LSNQWVSYDDIAEIRRKSRLVKALKLGGG 2658


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,735
Number of Sequences: 336
Number of extensions: 3066
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)