Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9d03
(734 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces pomb... 198 5e-52
SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces ... 192 4e-50
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 29 0.52
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 28 1.2
SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha... 27 2.1
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 2.8
SPBC21B10.13c |||transcription factor, homeobox type |Schizosacc... 26 4.8
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 26 4.8
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 26 6.4
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc... 25 8.5
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac... 25 8.5
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 25 8.5
>SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 460
Score = 198 bits (484), Expect = 5e-52
Identities = 107/236 (45%), Positives = 153/236 (64%), Gaps = 1/236 (0%)
Frame = +3
Query: 27 MSSSKFQLWGGCFEEEPSSVLRRLNDSLPVDFRLFREDIQGSRAWAEELFQSHHLSANDN 206
M+SS+ +LWGG F ++ N+S+ D R+F DI GS+A+A+ L Q +SA++
Sbjct: 1 MASSQ-KLWGGRFTGATDPLMTAYNESIHYDKRMFNADIDGSKAYAKALEQRGIISADE- 58
Query: 207 LAIQKGLDSVEKEIEQELTENGKLKDAEEDIHSVIECRLFKHSGDA-AFRLHTARSRNDQ 383
+ K LD +E ++ T L+ ++EDIH+ E RL + G A +LHT RSRNDQ
Sbjct: 59 --LDKMLDGLEAVRDEWKTNKFTLQPSDEDIHTANERRLGEIIGTGIAGKLHTGRSRNDQ 116
Query: 384 SATDTRLWMLASLPKLTSAIVELITVLATRAENEIDIISAGYTHLQRAQPVRWSHFLLSH 563
TD RLW+ L + ++V L+ V RAE+++DII GYTHLQRAQP+RWSHFLLSH
Sbjct: 117 VTTDMRLWLRDELDIIQKSLVGLLQVFVARAESDLDIIMPGYTHLQRAQPIRWSHFLLSH 176
Query: 564 AWALRDDVTRLEEQRSRLSRCPLGSGALAGCALTIDRKRLALNLGFDDITPNSMFA 731
A+++ +D+ RL++ SR++R PLG+GALAG +DRK L LGF+ + NSM A
Sbjct: 177 AFSILNDLDRLKQIYSRVNRLPLGAGALAGNPFAVDRKFLQKELGFEGVIMNSMNA 232
>SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 461
Score = 192 bits (468), Expect = 4e-50
Identities = 102/233 (43%), Positives = 145/233 (62%)
Frame = +3
Query: 33 SSKFQLWGGCFEEEPSSVLRRLNDSLPVDFRLFREDIQGSRAWAEELFQSHHLSANDNLA 212
SSK +LWGG F ++ N S+ + ED+ GS A+A+ L Q + +S + +
Sbjct: 5 SSK-KLWGGRFSGATDPLMAEFNKSIYSGKEMCEEDVIGSMAYAKALCQKNVISEEELNS 63
Query: 213 IQKGLDSVEKEIEQELTENGKLKDAEEDIHSVIECRLFKHSGDAAFRLHTARSRNDQSAT 392
I KGL+ +++E + L+ ++ED+H+ E RL + GD A +LHT RSRNDQ T
Sbjct: 64 ILKGLEQIQREWN---SGQFVLEPSDEDVHTANERRLTEIIGDVAGKLHTGRSRNDQVTT 120
Query: 393 DTRLWMLASLPKLTSAIVELITVLATRAENEIDIISAGYTHLQRAQPVRWSHFLLSHAWA 572
D RLW+ + ++ ++ L+ V RAE EID+I +GYTHLQRAQPVRWSHFL+SHA
Sbjct: 121 DLRLWLCRKIKEVEVYVINLLKVFTNRAEMEIDVIMSGYTHLQRAQPVRWSHFLMSHALP 180
Query: 573 LRDDVTRLEEQRSRLSRCPLGSGALAGCALTIDRKRLALNLGFDDITPNSMFA 731
L D+ RL + +R+S+ PLG+GALAG +DR+ L LGF+ I NSM A
Sbjct: 181 LLGDLGRLRQLYTRVSQLPLGAGALAGNPFNVDREFLRKELGFEGIIMNSMNA 233
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 29.5 bits (63), Expect = 0.52
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = -2
Query: 205 LSLADKWWL*NNSSAHARLPCISSRNNLKSTGKESFKRRSTEEGSS 68
L L KW++ NNS LP N+K E +R G+S
Sbjct: 437 LKLLKKWFVENNSVTVIALPSFEMAENIKKENAEQLNKRRCLLGAS 482
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +3
Query: 138 DIQGSRAWAEELFQSHHLSANDNLAIQKGLDSVEKEIEQELTENGKLKDA-EEDIHSVIE 314
D ++ E L Q+ + +Q L EKE+E+++T LKDA H V+E
Sbjct: 114 DCSSLKSVNEALKQAQDQNLKQTAQLQNLLSDKEKEVEKKITIIKDLKDALASSTHQVLE 173
>SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 473
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 402 GGCQWQTGHYDYVLCVDERLHRHCA*ITCIRSQN 301
GGC+ + G+YD V + + H I CI + N
Sbjct: 215 GGCEGRIGYYDANGVVRDVVQNHLTQIFCIAAMN 248
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +3
Query: 135 EDIQGSRAWAEELFQSHHLSANDNLAIQKGLDSVEKEIEQELTENGKLKDAEEDI 299
+ +Q S AEE + N+N +++ L++ K + TEN L+ A ++
Sbjct: 77 QQLQSSNNQAEESRNLISVLRNENESLKTNLENQNKRFDALTTENQSLRRANSEL 131
>SPBC21B10.13c |||transcription factor, homeobox type
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 184 WL*NNSSAHARLPCISSRNNLKSTGKESFKRRST 83
W N + R C+S RN L+ TG+ S RR +
Sbjct: 82 WFQNKRQSLRRSNCLS-RNRLEGTGENSLLRRKS 114
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 26.2 bits (55), Expect = 4.8
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +3
Query: 180 SHHLSANDNLAIQKGLDSVEKEIEQELTENGKLKDAEEDIHSVI-ECRLFKHSGDAAFRL 356
+H++S +DNL +Q+ L + + E EN K DA + H ++ E ++ D
Sbjct: 328 THYISLDDNLDVQESLGIFHYDPDYE--ENEKKYDAIK--HEILGEEDDDENEEDEEDSE 383
Query: 357 HTARSRNDQSATDTR 401
T+ S D+S D +
Sbjct: 384 ETSESEEDESVNDEK 398
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 66 EEEPSSVLRRLNDSLPVDFRLFREDIQGSRAWAEELFQSHHLSANDNLAIQK-GLDS 233
EE+ +S L RL ++ DFR + ++ + H + A D+ Q+ LDS
Sbjct: 66 EEDSTSYLNRLEEAFCRDFRCCGQTLEDLHQLIHHYEEQHAVLATDSAVPQEYSLDS 122
>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 493
Score = 25.4 bits (53), Expect = 8.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 258 LTENGKLKDAEEDIHSVIECRLFKHSGD 341
+T NG LK++ S+I +F +GD
Sbjct: 145 VTTNGSLKESLRKYSSIIAVNIFSETGD 172
>SPAC1D4.03c |aut12||autophagy associated protein
Aut12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 530 LSTL*MSIASRYNIYLIFSSSGK 462
LS + +A + YLIFSSSGK
Sbjct: 102 LSLISFDLAKQKRTYLIFSSSGK 124
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1115
Score = 25.4 bits (53), Expect = 8.5
Identities = 21/74 (28%), Positives = 32/74 (43%)
Frame = +3
Query: 165 EELFQSHHLSANDNLAIQKGLDSVEKEIEQELTENGKLKDAEEDIHSVIECRLFKHSGDA 344
EE+ + H S D L K D +K L GKL++ ++I+ V F+ A
Sbjct: 1040 EEIQLTEHDSIEDALTALKLYDCYDK-----LKSQGKLEETLDNIYEVGRRFKFRPPSVA 1094
Query: 345 AFRLHTARSRNDQS 386
+ L S D+S
Sbjct: 1095 SMSLEDRNSYGDES 1108
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,830,237
Number of Sequences: 5004
Number of extensions: 54974
Number of successful extensions: 187
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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