Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9d03
(734 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0735 + 10811326-10812342,10813199-10813555,10813962-108142... 166 2e-41
06_03_0769 + 24448483-24448825,24449228-24449305,24450812-244508... 30 2.2
08_01_0282 + 2299688-2299859,2300314-2300384,2300780-2300861,230... 29 5.1
07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342... 28 6.7
07_03_0207 - 15183894-15184685,15184993-15185078,15186042-151861... 28 6.7
04_04_1219 + 31835854-31836105,31836481-31837152 28 6.7
12_02_0404 - 18633355-18633783,18634215-18634232 28 8.8
10_01_0191 + 2122427-2123410 28 8.8
07_01_0254 - 1893079-1893181,1893455-1893492,1893586-1893706,189... 28 8.8
06_02_0345 + 14833838-14833997,14834095-14834552,14834633-148348... 28 8.8
>03_02_0735 + 10811326-10812342,10813199-10813555,10813962-10814225,
10814894-10815010,10815796-10815944,10816315-10816606,
10816681-10816845,10817106-10817357
Length = 870
Score = 166 bits (403), Expect = 2e-41
Identities = 96/229 (41%), Positives = 128/229 (55%)
Frame = +3
Query: 45 QLWGGCFEEEPSSVLRRLNDSLPVDFRLFREDIQGSRAWAEELFQSHHLSANDNLAIQKG 224
+LWGG FEE + + +S+ D++L++ DI GS+A A L ++A D I +G
Sbjct: 413 KLWGGRFEEGVTDAVEGFTESISYDWQLYKYDIMGSKAHASMLAAQGLITAGDKDIILEG 472
Query: 225 LDSVEKEIEQELTENGKLKDAEEDIHSVIECRLFKHSGDAAFRLHTARSRNDQSATDTRL 404
LD +EK I+ E + ED+H IE L + G+ A +LHTARSRNDQ TD RL
Sbjct: 473 LDQIEKLIQDGKFE---WRTDREDVHMNIEAALIEKVGEPAKKLHTARSRNDQIVTDLRL 529
Query: 405 WMLASLPKLTSAIVELITVLATRAENEIDIISAGYTHLQRAQPVRWSHFLLSHAWALRDD 584
W ++ K+ I + L A +D+I GYTHLQRAQPV H LLS+ L D
Sbjct: 530 WCRDAIDKILFRIKQFQVSLVLLASKYVDLIVPGYTHLQRAQPVLLPHLLLSYVEQLERD 589
Query: 585 VTRLEEQRSRLSRCPLGSGALAGCALTIDRKRLALNLGFDDITPNSMFA 731
RL R RL+ CPLG+ ALAG L IDR + A +L F NS+ A
Sbjct: 590 AGRLVNCRERLNFCPLGACALAGTGLPIDRFKTAKDLKFTAPMKNSIDA 638
>06_03_0769 +
24448483-24448825,24449228-24449305,24450812-24450855,
24451299-24451362,24451543-24451634,24451988-24452234,
24452632-24452775,24452905-24453011,24453096-24453149,
24453221-24453304,24454448-24454611,24455003-24455147
Length = 521
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Frame = +3
Query: 60 CFEEEPSSVLRRLNDSL---PVDFRLFREDIQGSRAWAEELFQSHHLSANDNLAIQKGLD 230
C ++ S++L D + PV+F L E Q W E+ S ANDN +++G D
Sbjct: 164 CVSQKSSNLLNEEADHVVPVPVNFPLPIE--QPDIFWREKDEDSEWSKANDNTDLEEGYD 221
Query: 231 SVEKEIEQELTEN 269
S + E+ + N
Sbjct: 222 SSKDEVSSVSSYN 234
>08_01_0282 +
2299688-2299859,2300314-2300384,2300780-2300861,
2300949-2301067,2301338-2301415,2301500-2301619,
2301729-2301788
Length = 233
Score = 28.7 bits (61), Expect = 5.1
Identities = 19/86 (22%), Positives = 39/86 (45%)
Frame = +3
Query: 63 FEEEPSSVLRRLNDSLPVDFRLFREDIQGSRAWAEELFQSHHLSANDNLAIQKGLDSVEK 242
F E P + + L+ V F++ ++G + ELF + +A+++ L V
Sbjct: 112 FVEHPENNEKPLDQKCKVKFKIVSLKVKGPMEYVPELFDEQ----KNQVAVEQILRVVFL 167
Query: 243 EIEQELTENGKLKDAEEDIHSVIECR 320
+ E++ + KLK + + +E R
Sbjct: 168 DAERQTPQMDKLKRQLAEAEAALEAR 193
>07_03_1479 - 26832976-26833095,26833737-26833943,26834104-26834252,
26834330-26834732,26834840-26835118,26835285-26835716,
26836362-26836838,26837171-26837212,26837285-26837545,
26837637-26838938,26839146-26839575,26839643-26840046,
26840360-26840716,26840842-26841102,26841494-26842141,
26842231-26842452,26842547-26842768,26842860-26843009,
26843739-26844111,26844467-26844689,26845167-26845425,
26845585-26845920,26846013-26846999,26848395-26849624,
26849706-26849768,26849858-26849910,26849998-26850079,
26850520-26850588,26851070-26851129,26851205-26851267,
26851993-26852101,26852742-26852827,26853120-26853847,
26854613-26854676
Length = 3716
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +3
Query: 378 DQSATDTRLWMLASLPKLTSAIVELITVLATRAENEIDIISAGYTHLQRAQP 533
++ A + W PK+ +A++EL +L A +D + L+RA P
Sbjct: 1377 EKLAQSQKSWKAGDEPKIAAAMIELFHLLPPAASKFLDDLVTLVIDLERALP 1428
>07_03_0207 -
15183894-15184685,15184993-15185078,15186042-15186144,
15186890-15186971,15187112-15187203,15187295-15187383,
15187467-15187547,15188610-15188724,15188894-15188935
Length = 493
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = -2
Query: 670 SMVRAQPANAPLPS 629
SMV AQPANAPLP+
Sbjct: 233 SMVPAQPANAPLPN 246
>04_04_1219 + 31835854-31836105,31836481-31837152
Length = 307
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Frame = -2
Query: 436 DVSFGKDASIQRRVSVADWSL---RLRAVC 356
D FGKDA++QRR+ VA RLRA+C
Sbjct: 206 DSGFGKDAAMQRRLLVAADRYGVDRLRAMC 235
>12_02_0404 - 18633355-18633783,18634215-18634232
Length = 148
Score = 27.9 bits (59), Expect = 8.8
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = +3
Query: 66 EEEPSSVLRRLNDSLPVDFRLFR--EDIQGSRAWAEELFQSHHLSANDNLAIQKGLDSVE 239
E ++V R L SL L R E ++ EL ++ ++ L I K D+ +
Sbjct: 51 ERLSNTVYRHLPCSLKAGSILSRAIEGTPVAKFKTRELRMFSYIETSEPLNIYKEEDNKD 110
Query: 240 KEIEQELTENGKLKDAEED 296
K+ E E + + LKD EE+
Sbjct: 111 KKEEAEESSSSSLKDEEEE 129
>10_01_0191 + 2122427-2123410
Length = 327
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = -3
Query: 660 ERNLLTHRCRVDNVRVYFFAPQVLLRHRGEPMRDSTKNDSILLAEHVVDEYSQQI 496
++ L+TH C D VR +FF + GE + + T+N ++ V+ E+ +
Sbjct: 205 KKTLVTHVCNDDRVRSHFF---FIFHINGENLGEITENKNMSERTLVIVEFVSDV 256
>07_01_0254 -
1893079-1893181,1893455-1893492,1893586-1893706,
1893800-1893869,1894231-1894401,1894485-1894659,
1894746-1894933,1895023-1895166,1895316-1895379,
1895464-1895556,1895649-1895734,1896434-1896574,
1896658-1896804,1896970-1897057,1898080-1898235,
1898428-1898577
Length = 644
Score = 27.9 bits (59), Expect = 8.8
Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 3/115 (2%)
Frame = +3
Query: 87 LRRLNDSLPVD-FRLFREDIQGSRAWAEELFQSHHLSANDNLAIQKGLDSVE--KEIEQE 257
LR N SLP RL + + + A +F++ I K +S K ++
Sbjct: 499 LRNANGSLPTSKIRLNMQRVMQNNA---AVFRTQETLEEGCKLITKAWESYHDVKISDRS 555
Query: 258 LTENGKLKDAEEDIHSVIECRLFKHSGDAAFRLHTARSRNDQSATDTRLWMLASL 422
L N L + E + +I + HS +A A +R D + D WM SL
Sbjct: 556 LIWNSDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDEQWMKHSL 610
>06_02_0345 +
14833838-14833997,14834095-14834552,14834633-14834870,
14834974-14835431,14836554-14836955
Length = 571
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 354 LHTARSRNDQSATDTRLWMLASLPKLTSAIVELITVLATRA 476
L A SR ++ AT+TR + + K T E ++ + TRA
Sbjct: 188 LEVALSRKEKKATETRAYQAVPIVKTTWPFAEQLSRVYTRA 228
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,768,418
Number of Sequences: 37544
Number of extensions: 363319
Number of successful extensions: 1080
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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