Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9d03
         (734 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025459-6|AAN63405.1|  328|Caenorhabditis elegans Fumarase prot...    38   0.010
AF025459-5|AAB70982.1|  501|Caenorhabditis elegans Fumarase prot...    38   0.010
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein...    31   1.1  
U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z81492-4|CAB04031.1|  624|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily ass...    29   4.5  
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    28   7.9  

>AF025459-6|AAN63405.1|  328|Caenorhabditis elegans Fumarase protein
           1, isoform b protein.
          Length = 328

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 23/74 (31%), Positives = 35/74 (47%)
 Frame = +3

Query: 426 KLTSAIVELITVLATRAENEIDIISAGYTHLQRAQPVRWSHFLLSHAWALRDDVTRLEEQ 605
           +L  A+ +L T L  +AE   DII  G TH Q A P+       ++   L + + R+E  
Sbjct: 24  RLLPALKKLRTALHNKAEEFKDIIKIGRTHTQDAVPLTLGQEFSAYVTQLDNSIARVEST 83

Query: 606 RSRLSRCPLGSGAL 647
             RL +   G  A+
Sbjct: 84  LPRLYQLAAGGTAV 97


>AF025459-5|AAB70982.1|  501|Caenorhabditis elegans Fumarase protein
           1, isoform a protein.
          Length = 501

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 23/74 (31%), Positives = 35/74 (47%)
 Frame = +3

Query: 426 KLTSAIVELITVLATRAENEIDIISAGYTHLQRAQPVRWSHFLLSHAWALRDDVTRLEEQ 605
           +L  A+ +L T L  +AE   DII  G TH Q A P+       ++   L + + R+E  
Sbjct: 197 RLLPALKKLRTALHNKAEEFKDIIKIGRTHTQDAVPLTLGQEFSAYVTQLDNSIARVEST 256

Query: 606 RSRLSRCPLGSGAL 647
             RL +   G  A+
Sbjct: 257 LPRLYQLAAGGTAV 270


>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical
           protein C10C6.1 protein.
          Length = 1565

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +3

Query: 330 HSGDAAFRLHTARSRNDQSAT--DTRLWMLASLP 425
           HSG    R ++AR+ +   A   DTR W LASLP
Sbjct: 166 HSGTITLRTYSARNGSSLMAPVQDTRRWSLASLP 199


>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
           protein.
          Length = 1565

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +3

Query: 330 HSGDAAFRLHTARSRNDQSAT--DTRLWMLASLP 425
           HSG    R ++AR+ +   A   DTR W LASLP
Sbjct: 166 HSGTITLRTYSARNGSSLMAPVQDTRRWSLASLP 199


>U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical protein
            C18C4.5b protein.
          Length = 1046

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/82 (25%), Positives = 33/82 (40%)
 Frame = +3

Query: 69   EEPSSVLRRLNDSLPVDFRLFREDIQGSRAWAEELFQSHHLSANDNLAIQKGLDSVEKEI 248
            E+  S L + ND L +D +   + +       +E     +L   +  A+Q    S   EI
Sbjct: 819  EDKISELLKTNDLLALDVQKLSKSLDSKDQQLKEAEDEKNLMLEEVQALQNATPSDSAEI 878

Query: 249  EQELTENGKLKDAEEDIHSVIE 314
             +  TEN +L       HS  E
Sbjct: 879  AELTTENARLAGELLKSHSAAE 900


>U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical protein
            C18C4.5a protein.
          Length = 1022

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/82 (25%), Positives = 33/82 (40%)
 Frame = +3

Query: 69   EEPSSVLRRLNDSLPVDFRLFREDIQGSRAWAEELFQSHHLSANDNLAIQKGLDSVEKEI 248
            E+  S L + ND L +D +   + +       +E     +L   +  A+Q    S   EI
Sbjct: 819  EDKISELLKTNDLLALDVQKLSKSLDSKDQQLKEAEDEKNLMLEEVQALQNATPSDSAEI 878

Query: 249  EQELTENGKLKDAEEDIHSVIE 314
             +  TEN +L       HS  E
Sbjct: 879  AELTTENARLAGELLKSHSAAE 900


>Z81492-4|CAB04031.1|  624|Caenorhabditis elegans Hypothetical
           protein E03H4.7 protein.
          Length = 624

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/85 (20%), Positives = 40/85 (47%)
 Frame = +3

Query: 201 DNLAIQKGLDSVEKEIEQELTENGKLKDAEEDIHSVIECRLFKHSGDAAFRLHTARSRND 380
           DNLA ++  DS  + I+QE  +   L      +       +     D  +++   +    
Sbjct: 438 DNLACKQYYDSFVERIQQETPDYLFLVSRYISVGDPFPANVTSFEEDPVYQIMKWQMLRL 497

Query: 381 QSATDTRLWMLASLPKLTSAIVELI 455
            S+T  R+++L ++P++ + +++ I
Sbjct: 498 SSSTKKRIFILDAVPRVNTKLIDRI 522


>U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 213 protein.
          Length = 1437

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = +3

Query: 60  CFEEEP-SSVLRRLNDSL---PVDFRLFREDIQGSRAWAEELFQSHHLSANDN 206
           CF+++  S  L RL   +      F LFRE+ +G      EL ++   SAN+N
Sbjct: 89  CFKKDDHSKALIRLKTKVYFKQAKFNLFREESEGYSKLVTELMEAAESSANEN 141


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
            F25H8.3 protein.
          Length = 2165

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 73   NLPRCFDV*TILYRWTLDYFVKIYKEVARGQK 168
            ++  CF V    YRW +  + K   E ARGQK
Sbjct: 1741 SVANCFPVACPAYRWNVTPWSKCKDECARGQK 1772


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
            protein F25H8.3 protein.
          Length = 2165

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 73   NLPRCFDV*TILYRWTLDYFVKIYKEVARGQK 168
            ++  CF V    YRW +  + K   E ARGQK
Sbjct: 1741 SVANCFPVACPAYRWNVTPWSKCKDECARGQK 1772


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,902,147
Number of Sequences: 27780
Number of extensions: 315721
Number of successful extensions: 1024
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)