Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9d02
         (712 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    23   2.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   3.2  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   3.2  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   5.7  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.5  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.5  
AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin pr...    21   7.5  
AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin pr...    21   7.5  

>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 104 GSARAHTGTTTSRPYTLSASSTRP 175
           GS+R+H   T S+P    AS   P
Sbjct: 245 GSSRSHQPATKSKPRPAPASRNAP 268


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 103 WLGEGPHWDHNEQALYFVSIFDE 171
           WL +G   DHNE  L   S+  E
Sbjct: 361 WLKDGHPIDHNEAVLRIESVRKE 383



 Score = 21.4 bits (43), Expect = 7.5
 Identities = 13/53 (24%), Positives = 23/53 (43%)
 Frame = +1

Query: 451 PGKFDLKKGSLYRIDPDGSVHRLESNIDISNGLCWDLQRSAFYFADSFEYTIR 609
           P +FD+K  +      D +V + E+  +   G+ W++            YTIR
Sbjct: 796 PPQFDIKLRNQTSRRGDPAVLQCEAKGEKPIGILWNINNKRLEPKGDNRYTIR 848


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = -2

Query: 534 VDVGLEAVHGAVRVDAVQRPLLQ--VELSRFVFVTHRSGKQP 415
           VD+ L A+   V VD VQ+P L     L  + F     G+ P
Sbjct: 572 VDIPLNAIVEIVLVDEVQQPNLSHPFHLHGYAFNVIGIGRSP 613


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 142 PARCGPSVGPRRATP 98
           P  C PSVG R+  P
Sbjct: 47  PGSCDPSVGLRQGIP 61


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 690 TFQSVVAVLKHGLCVRDAPGL 628
           TFQ+ V V  +G C+   PG+
Sbjct: 103 TFQTNVVVKHNGSCLYVPPGI 123


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 690 TFQSVVAVLKHGLCVRDAPGL 628
           TFQ+ V V  +G C+   PG+
Sbjct: 103 TFQTNVVVKHNGSCLYVPPGI 123


>AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin
           protein.
          Length = 685

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +1

Query: 490 IDPDGSVHRLESNIDISNGLCWDLQRSAF 576
           ++P  ++  +++ I    G+  D QRS F
Sbjct: 397 VEPSDTIENVKAKIQDKEGIPPDQQRSIF 425


>AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin
           protein.
          Length = 112

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +1

Query: 490 IDPDGSVHRLESNIDISNGLCWDLQRSAF 576
           ++P  ++  +++ I    G+  D QRS F
Sbjct: 65  VEPSDTIENVKAKIQDKEGIPPDQQRSIF 93


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,300
Number of Sequences: 336
Number of extensions: 3509
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)