Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9d02
         (712 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0088 - 627825-628984,629339-629509,629612-630416                 33   0.22 
02_05_0278 + 27404914-27404947,27405088-27405228,27405747-274057...    30   2.1  
10_08_0708 + 20040482-20040808,20040906-20041280                       29   2.8  
03_06_0601 + 34991912-34992352,34993719-34994516                       29   2.8  
08_02_0670 - 19877091-19877618,19880033-19880436,19880505-19880622     29   4.8  
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157...    28   6.4  
01_05_0551 + 23169751-23170491                                         28   6.4  
06_01_0830 + 6261629-6261704,6261829-6261974,6262086-6262310,626...    28   8.4  
05_01_0164 + 1134815-1134911,1135078-1135278,1135875-1136156,113...    28   8.4  
01_06_0039 + 25857805-25858894,25858997-25859345,25860019-258601...    28   8.4  

>02_01_0088 - 627825-628984,629339-629509,629612-630416
          Length = 711

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 21/54 (38%), Positives = 26/54 (48%)
 Frame = -3

Query: 233 GFPSSLDLVCFPVSGTYLCMVSSKMLTKYRACSLWSQCGPSPSHTGSVTACNCG 72
           G P+ LD V    +G   C  + K  T Y   S  S C  SP+ TG + ACN G
Sbjct: 207 GVPTVLDWV----AGRESCAQAPKNRTSYACVSTNSSCINSPNATGYLCACNNG 256


>02_05_0278 +
           27404914-27404947,27405088-27405228,27405747-27405772,
           27406036-27406071,27406296-27406976
          Length = 305

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 98  RCGSARAHTGTTTSRPYTLSASSTRPYISTCQK-RGNIRG 214
           RC SARA +  +++ P    AS  RP +S+  + RG  RG
Sbjct: 252 RCASARAASRRSSAAPARRRASEPRPRVSSAMRVRGLARG 291


>10_08_0708 + 20040482-20040808,20040906-20041280
          Length = 233

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/46 (41%), Positives = 22/46 (47%)
 Frame = -2

Query: 543 VGDVDVGLEAVHGAVRVDAVQRPLLQVELSRFVFVTHRSGKQPAPG 406
           +G V VG EAVHG    DA + PLL   L RF  +       P  G
Sbjct: 170 IGFVRVG-EAVHGMRLFDASRSPLLDAWLDRFAALDAAKAVLPDTG 214


>03_06_0601 + 34991912-34992352,34993719-34994516
          Length = 412

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -2

Query: 615 VSPDGVLEGVREVEGAPLQVPAEAVGDVDV--GLEAVHGAVRVDAVQR 478
           V P  V E +   + +     AEA GDV V   + AV GAVRVD V+R
Sbjct: 366 VRPPWVKEAIVSDDESAAAATAEA-GDVPVPRAVPAVRGAVRVDGVRR 412


>08_02_0670 - 19877091-19877618,19880033-19880436,19880505-19880622
          Length = 349

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
 Frame = +1

Query: 328 TARLVRTVAEVDQDNPNNRFNDAK--ADPRGRLFAGTMGHEYEPGKFDLKKGSLYRIDPD 501
           +A +     EVDQ + +         A   G L A   GH+  P K DL        D D
Sbjct: 191 SATITTAAQEVDQPDEHTEAASTTGFATVDGALAAPPPGHQQPPHKDDLVSSGGTNDDGD 250

Query: 502 GSVHRLESNIDISNGLCWDLQRSAFYFADSFE 597
           G    +    D++ G    L   + YFAD+ E
Sbjct: 251 GGAAVVV--FDVTEGANDRLSCESAYFADAAE 280


>02_05_0366 - 28313190-28313601,28313759-28314225,28315044-28315782,
            28316548-28316615,28316693-28316757,28316922-28320162,
            28320239-28320301,28320756-28320824,28321020-28321055,
            28322035-28322280,28322531-28322569,28322695-28322816,
            28322921-28323004,28323100-28323235,28323486-28323535,
            28323620-28323756,28323863-28323951,28324847-28324954,
            28325080-28325163,28325841-28325888,28326036-28326153,
            28328262-28328347
          Length = 2168

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 76   QLQAVTEPVWLGEGPHWDHNEQALYFVSIFDETIHKYVPET-GKHTRSKLDGKP 234
            + + V+E  + GEG HW     A      +D   HK  P++ GKH  S   G+P
Sbjct: 2030 RFRMVSETCFEGEGSHW-----ASSAFHTYDAGRHKSGPKSIGKHKASSESGRP 2078


>01_05_0551 + 23169751-23170491
          Length = 246

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 11/65 (16%)
 Frame = +1

Query: 109 GEGPH---WDHNEQAL-YFVSIFDETIHKYVPE------TGKHTRSKLDGKPTFI-IPIE 255
           GE P    WD  E+ L Y++ + ++++HKY+ +       G H      GKP +    + 
Sbjct: 182 GEEPQPLDWDFLEELLFYYLQLNEQSVHKYILKAFADLTAGAHVSCPARGKPQWADKSVR 241

Query: 256 GKKHH 270
            +KH+
Sbjct: 242 SRKHY 246


>06_01_0830 +
           6261629-6261704,6261829-6261974,6262086-6262310,
           6262910-6263122,6264007-6264300
          Length = 317

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +1

Query: 289 RLVVEIQWTGEDQTARLVRTVAEVDQDNPNNRFNDAKADPRGRLFAGTMGHEYE 450
           RL +    T E+   R++ T AEVD       +    + P  R  AG    +YE
Sbjct: 253 RLAIAGMGTDENSLTRIITTRAEVDLKLITEAYQKRNSVPLERAVAGDTSGDYE 306


>05_01_0164 +
           1134815-1134911,1135078-1135278,1135875-1136156,
           1136237-1136271,1136356-1136445,1137228-1137357,
           1137400-1138004,1138128-1138562
          Length = 624

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 322 LLLSIVSPRPACPDPPRNGVSSLL 251
           LLL + SP P  PDPP  G   ++
Sbjct: 15  LLLDLTSPPPLHPDPPHAGCDEVM 38


>01_06_0039 +
           25857805-25858894,25858997-25859345,25860019-25860104,
           25860242-25860399,25861489-25861565,25861656-25861722
          Length = 608

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = -2

Query: 657 GLCVRDAPGLHVVVVSPDGVLEGVREVEGAPLQVPAEAVGDVDVGLEAVHGAVRVDAVQ 481
           G    DA  LH+ V S       V EV G P+       G +DVG + +H  +  D  Q
Sbjct: 301 GALNHDAKELHMFVWSSSA--SPVSEVSGLPVFSGGGGGGALDVGAKEIHMVIPADLPQ 357


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,136,041
Number of Sequences: 37544
Number of extensions: 439184
Number of successful extensions: 1707
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1705
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)