Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9c15
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0316 - 8878540-8878605,8880040-8880732,8881270-8881758           29   2.4  
05_07_0346 + 29436443-29436562,29438067-29438600,29439083-294392...    28   5.6  
12_02_1029 - 25521641-25521852,25521978-25522035,25522142-255221...    28   7.4  

>02_02_0316 - 8878540-8878605,8880040-8880732,8881270-8881758
          Length = 415

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 280 SPINRRTAMPATPNPPRTSNACSSIWICYKLS 185
           SP N+  A  AT  PP  + A SS  + Y +S
Sbjct: 243 SPYNKHAAAAATARPPHPAAATSSCSVAYSMS 274


>05_07_0346 +
           29436443-29436562,29438067-29438600,29439083-29439247,
           29439436-29439531
          Length = 304

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 267 GELLCQPPPILPEPVMLAAPFGSATSLVS 181
           G+L   P PI+ EPV+   P  +A S++S
Sbjct: 58  GDLFKAPEPIIEEPVLSLDPVAAAISMMS 86


>12_02_1029 -
           25521641-25521852,25521978-25522035,25522142-25522191,
           25522280-25522585,25522666-25523068,25524573-25524624,
           25525523-25525572,25526151-25526306,25526987-25527286
          Length = 528

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 535 ENSTCPLVGG-VGSSSRPLSAGASLSISLPVVPE 437
           +    PL  G +  SS PL+ G SLS S PV P+
Sbjct: 114 QQEVSPLTSGRLSHSSGPLNGGGSLSDSPPVSPD 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,275,045
Number of Sequences: 37544
Number of extensions: 252733
Number of successful extensions: 962
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)