Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9c12
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.83 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.9  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   2.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   4.4  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   7.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   7.8  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 523 HHRRGRHTLQHLRGPRH 573
           HH+ G HT+    GP H
Sbjct: 335 HHQHGNHTMGPTMGPPH 351


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
 Frame = -3

Query: 628 RASRECCKHKEELPPEPVHAEDRE-DVGGYGG 536
           R    C  H   LPP P+H E  +  V G  G
Sbjct: 429 RFGGSCLIHGPPLPPLPLHTECEDLSVSGEAG 460


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
 Frame = -3

Query: 628 RASRECCKHKEELPPEPVHAEDRE-DVGGYGG 536
           R    C  H   LPP P+H E  +  V G  G
Sbjct: 429 RFGGSCLIHGPPLPPLPLHTECEDLSVSGEAG 460


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +1

Query: 40  FAGITEILDLDGPTRRRSRSIPQHLSHEHRPQ 135
           F+  T ++DL  P   R   I Q   H H  Q
Sbjct: 49  FSPSTHLMDLSSPPEHRDLPIYQSHHHLHHHQ 80


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = -3

Query: 382 TIEHLREP-HHQTVIPDME 329
           TI HLR+P HH T I + +
Sbjct: 309 TITHLRDPDHHSTDIQNCD 327


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 595 ELPPEPVHAEDRED 554
           E   EP H EDRE+
Sbjct: 421 EFEVEPAHGEDREE 434


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 468 ECVPSRVTYAVTSQMS 421
           E +P+RVT  VTS ++
Sbjct: 240 EAIPARVTLGVTSLLT 255


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 468 ECVPSRVTYAVTSQMSAS 415
           E  P+RVT  VTS ++ S
Sbjct: 271 EAAPARVTLGVTSLLTLS 288


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,047
Number of Sequences: 438
Number of extensions: 3256
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)