Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9c10
(657 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1207 - 25302186-25302275,25303089-25303141,25303400-253037... 34 0.087
03_06_0224 - 32483363-32483671,32483765-32483929,32484957-32485301 31 1.1
01_07_0205 - 41978437-41980599,41980805-41981215 31 1.1
11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008 30 1.4
01_05_0745 - 24852048-24853532 30 1.4
01_05_0159 + 18716055-18716272,18716900-18718529,18718622-187186... 30 1.4
03_05_0092 - 20714102-20717902 29 2.5
01_06_0270 + 28048449-28048577,28048915-28048978,28049537-280496... 29 2.5
03_06_0678 - 35480711-35484658 29 3.3
01_01_0205 + 1764034-1767601,1767934-1767944 29 3.3
12_01_0736 + 6582371-6585370 29 4.3
08_02_1435 + 27079184-27082006 29 4.3
07_03_0312 + 16606724-16606796,16606885-16607015,16607105-166072... 29 4.3
01_03_0289 - 14725832-14726114,14726216-14726298,14726432-147265... 29 4.3
03_06_0680 - 35497868-35497884,35498058-35501961 28 5.7
12_01_0718 + 6339982-6342981 28 7.5
06_01_1112 - 9157776-9158149,9158248-9161158 28 7.5
01_01_0030 + 226182-226634,226742-226864,227557-227785,228653-22... 28 7.5
03_06_0682 - 35516081-35518303 27 9.9
>08_02_1207 -
25302186-25302275,25303089-25303141,25303400-25303788,
25303968-25304338,25304362-25304502
Length = 347
Score = 34.3 bits (75), Expect = 0.087
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = +1
Query: 274 TEAIISPNLIVDNEEDSTKLTLAYEWLYEVPRTIVDKFSNHIKYLDISHNKI 429
+ ++I+P + D + K+ L++ L E T V +F +H+ YLD+SHN I
Sbjct: 194 SSSVINPLFLFDIAKPMAKIDLSWNRL-EFDMTKV-RFPHHLNYLDLSHNSI 243
>03_06_0224 - 32483363-32483671,32483765-32483929,32484957-32485301
Length = 272
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +2
Query: 314 KRTLQN*LWPMNGCMKCQGQ 373
K TLQN W NGC C GQ
Sbjct: 176 KGTLQNLYWKANGCSACSGQ 195
>01_07_0205 - 41978437-41980599,41980805-41981215
Length = 857
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/32 (37%), Positives = 25/32 (78%), Gaps = 1/32 (3%)
Frame = +1
Query: 382 KFSNHIKYLDISHNKITNL-DPLVHFFHLSSL 474
+F H++YLD+S++ IT++ D +V+ ++L +L
Sbjct: 546 RFLEHLRYLDLSNSWITSIPDDVVYLYNLQTL 577
>11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008
Length = 1058
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +1
Query: 331 LTLAYEWLYE-VPRTIVDKFSNHIKYLDISHNKITNLDP 444
L+L+Y WL +P ++V+ SN ++ LDISHN +T P
Sbjct: 516 LSLSYNWLSSYIPASLVN-LSNLLQ-LDISHNNLTGALP 552
>01_05_0745 - 24852048-24853532
Length = 494
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 394 HIKYLDISHNKITNLDPLVHFFHLSSLIADHNPI 495
H++ LD+S+N++ P F HLS L HN +
Sbjct: 211 HLQLLDLSYNQLAGEVPPFKFQHLSILDLSHNAL 244
>01_05_0159 +
18716055-18716272,18716900-18718529,18718622-18718693,
18718800-18719213
Length = 777
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +1
Query: 217 GVISVDLSRDIVVDSMTDMTEAIISPNLIVDNEEDSTKLTLAYEWL-YEVPRTIVDKFSN 393
GVI ++LSRD++++S M + S + DN + +++ + W ++ I+D N
Sbjct: 338 GVI-LELSRDLLLESFPAMLPIVSSLIVAADNSGNDVTVSMEFTWFGVKILNKIMDNPDN 396
Query: 394 HIKYLDISHNKITNL 438
K D I ++
Sbjct: 397 CNKVADADGQVIASI 411
>03_05_0092 - 20714102-20717902
Length = 1266
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +1
Query: 307 DNEEDSTKLTLAYEWLYEVPRTIVDKFSNHIKYLDISHNKITN 435
D +D T LT LY+ P+ +VDKF ++ L+IS IT+
Sbjct: 1042 DGFQDLTALTDLS--LYDCPKLLVDKFHTSLRKLEISECFITH 1082
>01_06_0270 +
28048449-28048577,28048915-28048978,28049537-28049638,
28049971-28050021,28050075-28050172,28050395-28050485,
28050718-28050782,28050913-28051107,28051207-28051326,
28051592-28051662,28051787-28052012,28052330-28052407,
28052507-28052735,28052958-28053097,28053571-28053699
Length = 595
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +1
Query: 274 TEAIISPNLIVDNEEDSTKLTLAYEWLYEVPRTIVDKFSNHIKYLDISH-NKITNLDPLV 450
T + N++ + +S ++ Y + E RT++D+F + +I H +K+ + DP V
Sbjct: 508 TNVLAYVNMVCSSLRNSIPKSIVYCQVREAKRTLLDRFFTELGAREIKHISKLLDEDPAV 567
>03_06_0678 - 35480711-35484658
Length = 1315
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/32 (37%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = +1
Query: 382 KFSNHIKYLDISHNKITNL-DPLVHFFHLSSL 474
K+ +H++YLD+S++KI L + + +HL +L
Sbjct: 593 KYLHHLRYLDLSYSKIEALPEDISILYHLQTL 624
>01_01_0205 + 1764034-1767601,1767934-1767944
Length = 1192
Score = 29.1 bits (62), Expect = 3.3
Identities = 9/27 (33%), Positives = 22/27 (81%)
Frame = +1
Query: 361 VPRTIVDKFSNHIKYLDISHNKITNLD 441
+P+ I +K+S+ + +L++SHN +T+++
Sbjct: 739 IPKWIWEKWSSSVVHLNLSHNMLTSME 765
>12_01_0736 + 6582371-6585370
Length = 999
Score = 28.7 bits (61), Expect = 4.3
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Frame = +1
Query: 292 PNLIVDNEEDSTKLTLAYEWLYEVPRTIVDKFSNHIKYLDISHNKITNL--DPL----VH 453
PN I+ + + T L L+Y + V K S + L++SHNK T+ DPL +
Sbjct: 511 PN-ILRHLPEITSLDLSYNQIRGAIPQWVWKTSGYFSLLNLSHNKFTSTGSDPLLPLNIE 569
Query: 454 FFHLS 468
FF LS
Sbjct: 570 FFDLS 574
>08_02_1435 + 27079184-27082006
Length = 940
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = +1
Query: 331 LTLAYEWLYEVPRTIVDKFSNHIKYLDISHNKITNLDPLVHFFHLSSLIA 480
L L+ L V T + + SN + YLDIS NK+ +HF +LS L A
Sbjct: 351 LDLSENSLSGVLPTSISRLSN-LTYLDISFNKLIGELSELHFTNLSRLDA 399
>07_03_0312 +
16606724-16606796,16606885-16607015,16607105-16607274,
16607365-16607511,16608248-16608299,16608725-16608899,
16609523-16609605,16610528-16610740,16611850-16611981,
16612517-16612652,16613218-16613273,16613868-16613910,
16613990-16614435
Length = 618
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Frame = +1
Query: 160 NTMDDKINNHASCSSVPDEGVISVDLSRDIVVDSMTDMTEAI-ISPNLIVDNEEDSTKLT 336
N MD +I +H I DL D ++ M D E + I D +
Sbjct: 176 NNMDPQIRHHYEVIQDGSPCHIYFDLEFDPRLNKMRDADEMVDILVAATFSALHDKYSIE 235
Query: 337 LAYEWLYEVPRTIVDKFSNHI 399
EW+ E+ + +KFS H+
Sbjct: 236 GQEEWIIELDSSTEEKFSRHL 256
>01_03_0289 -
14725832-14726114,14726216-14726298,14726432-14726545,
14727830-14728199,14728726-14728856,14728970-14729078,
14729257-14729378,14729522-14729625,14729849-14729953,
14730034-14730192,14730336-14730391,14730576-14730627,
14730725-14731031
Length = 664
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +1
Query: 262 MTDMTEAIISPNLIVDNEEDSTKLTLAYEWLYEVP--RTIVDKFSNHIKYLDISH 420
M A I P +V E+D +L +E + P + I+ +SNH+K DI H
Sbjct: 522 MAAQFNATIVPFGVV-GEDDLMELLCTFEDIRNAPFGKEIMQAYSNHLKLRDIDH 575
>03_06_0680 - 35497868-35497884,35498058-35501961
Length = 1306
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +1
Query: 382 KFSNHIKYLDISHNKITNL-DPLVHFFHLSSL 474
K+ +H++YLD+S +KI L + + +HL +L
Sbjct: 602 KYLHHLRYLDLSESKIKALPEDISILYHLQTL 633
>12_01_0718 + 6339982-6342981
Length = 999
Score = 27.9 bits (59), Expect = 7.5
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Frame = +1
Query: 325 TKLTLAYEWLYEVPRTIVDKFSNHIKYLDISHNKITNL--DPL----VHFFHLS 468
T L L+Y + V K S + L++SHNK T+ DPL + FF LS
Sbjct: 521 TSLDLSYNQIRGAIPQWVWKTSGYFSLLNLSHNKFTSTGSDPLLPLNIEFFDLS 574
>06_01_1112 - 9157776-9158149,9158248-9161158
Length = 1094
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = +1
Query: 370 TIVDKFSN--HIKYLDISHNKITNLDP--LVHFFHLSSLIADHNPI 495
+I D FSN ++ LDISHN I+ P L +F L++L N +
Sbjct: 651 SIPDSFSNLSGLQILDISHNNISGTIPKYLANFTSLANLNLSFNKL 696
>01_01_0030 +
226182-226634,226742-226864,227557-227785,228653-228696
Length = 282
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = -2
Query: 647 GAAGLPIKHR-YCKFGQDSFSL 585
G P+ HR YCK G+D++SL
Sbjct: 111 GGGAPPVTHRIYCKAGEDNYSL 132
>03_06_0682 - 35516081-35518303
Length = 740
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +1
Query: 382 KFSNHIKYLDISHNKITNL-DPLVHFFHLSSLIADH 486
K+ +H++YLD+S ++I L + + +HL +L H
Sbjct: 594 KYHHHLRYLDLSCSEIKALPEDISILYHLQTLNLSH 629
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,955,836
Number of Sequences: 37544
Number of extensions: 282313
Number of successful extensions: 798
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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