Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9c03
(704 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2... 192 3e-50
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 33 0.030
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 33 0.053
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 33 0.053
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 32 0.092
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 31 0.12
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 31 0.16
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 31 0.16
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 30 0.37
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 29 0.65
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 29 0.86
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc... 29 0.86
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 28 1.5
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 28 1.5
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p... 28 1.5
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 28 1.5
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 28 1.5
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 27 2.0
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos... 27 2.0
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 27 2.0
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 27 2.0
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 27 2.0
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 27 3.5
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 3.5
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.5
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 27 3.5
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 27 3.5
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 27 3.5
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|... 27 3.5
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 27 3.5
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 27 3.5
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 27 3.5
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 27 3.5
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 26 4.6
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 26 4.6
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 26 4.6
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 26 4.6
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 26 6.0
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 26 6.0
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 26 6.0
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|... 26 6.0
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 26 6.0
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma... 26 6.0
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 26 6.0
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 26 6.0
SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5 ... 25 8.0
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 25 8.0
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 25 8.0
>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 202
Score = 192 bits (469), Expect = 3e-50
Identities = 86/166 (51%), Positives = 122/166 (73%)
Frame = +2
Query: 206 RPLVLCGPSGSGKSTLLKRLLKEFPDKFGFSVSHTTRAPRAGEKNGVHYHFTNLNDMSTA 385
+P+V+ GPSG GKSTLLKRLLK+ DK GFSVSHTTR PRAGEK+G+ YHF +
Sbjct: 19 KPVVVFGPSGVGKSTLLKRLLKDHGDKLGFSVSHTTRTPRAGEKDGIDYHFVTKEEFQKL 78
Query: 386 IEKGEFIETAIFSGNIYGTSKKAVDDVRRTGKICVLDIEMEGVKQIKRTDLDPLLVFVMP 565
+ + +F+E A+FSGN+YGTS A+ ++ K +LDI+++GV Q+K + +D VF+ P
Sbjct: 79 VAEEKFVEWAVFSGNMYGTSIMAIQELEAVNKKAILDIDLQGVLQVKASPIDAQYVFLAP 138
Query: 566 PSIDELERRLRARNTEQEDSLKKRLETARREIKFGQEPGNFNIIIL 703
PSI++LE RLR R TE E ++ +RLE AR EI++ ++PGNF+ +I+
Sbjct: 139 PSIEQLEVRLRGRGTENESAILQRLERARAEIEYSEKPGNFDALIV 184
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 33.5 bits (73), Expect = 0.030
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +2
Query: 212 LVLCGPSGSGKSTLLKRLLKEFPDKFGFSVSHT 310
+VL GPSG+GKS LL+R +K +++ VSHT
Sbjct: 12 IVLAGPSGTGKSCLLQRFVK---NQWDDQVSHT 41
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 32.7 bits (71), Expect = 0.053
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +2
Query: 197 KGPRPLVLC--GPSGSGKSTLLKRLLKEFPDKFGFSVSHTTRAPRAGEKNGVHYHFTNLN 370
+ P P+++ GP G+GKSTL+K L++ + K+ S AG+K + + N
Sbjct: 70 EAPPPVIVAVMGPPGTGKSTLIKSLVRRY-SKYTISQITGPITVVAGKKRRITF-LECPN 127
Query: 371 DMSTAIEKGEFIETAI 418
D+S+ I+ + + +
Sbjct: 128 DLSSMIDVAKIADLVL 143
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 32.7 bits (71), Expect = 0.053
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +2
Query: 206 RPLVLCGPSGSGKSTLLKRLLKE 274
R L++CGPSG GKST ++ L KE
Sbjct: 106 RLLLICGPSGCGKSTAVQVLAKE 128
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 31.9 bits (69), Expect = 0.092
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Frame = +2
Query: 206 RPLVLCGPSGSGKSTLLKRLLKEFPD----KFGFSVSHTTRAPRAG-EKNGVHYHFTNLN 370
R ++ CGP GSGKS L+ L+ D FS+S ++++ + E++ V+Y T +
Sbjct: 2514 RCVIFCGPPGSGKSMLMLGTLRSRQDVEVIALNFSISTSSKSVVSFLEQSTVYYRSTGMT 2573
Query: 371 DM 376
M
Sbjct: 2574 IM 2575
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 31.5 bits (68), Expect = 0.12
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 218 LCGPSGSGKSTLLKRLLKEFPDKFG 292
+ GPSGSGKST + LL+ F +G
Sbjct: 467 IIGPSGSGKSTFISLLLRYFSPTYG 491
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 212 LVLCGPSGSGKSTLLKRLLKEFPDK 286
+ + G SGSGKSTL++ L K +P +
Sbjct: 1131 VAIVGISGSGKSTLVELLRKTYPSE 1155
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 31.1 bits (67), Expect = 0.16
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 212 LVLCGPSGSGKSTLLKRLLKEFPDKFGFSVSH 307
+ L GP+G+GK+TL+K +L++ G V H
Sbjct: 623 VALVGPNGAGKTTLIKLILEKVQPSTGSVVRH 654
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 31.1 bits (67), Expect = 0.16
Identities = 11/17 (64%), Positives = 16/17 (94%)
Frame = +2
Query: 218 LCGPSGSGKSTLLKRLL 268
LCGP+GSGKSTL++ ++
Sbjct: 465 LCGPNGSGKSTLMRAIV 481
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 212 LVLCGPSGSGKSTLLKRLLKEFPDKFGFSVSH 307
+ + GP+G+GKSTL+K L E G H
Sbjct: 703 IAVIGPNGAGKSTLIKVLTGELLPTVGEIYQH 734
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 29.9 bits (64), Expect = 0.37
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 694 DIEVSRFLTKFNLSSCRFQSLFQAIFLFRITGAESSFQFIY 572
D+ S +K +S C SLF ++F+ + GA S FIY
Sbjct: 696 DVISSLLRSKMEVSICSGDSLFTSVFVAKHCGALDSCNFIY 736
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 29.1 bits (62), Expect = 0.65
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 224 GPSGSGKSTLLKRLLKEFPDKFGFSVSH 307
GP+G+GKST+LK L+++ G H
Sbjct: 551 GPNGAGKSTMLKLLIEQLHPTSGIVSRH 578
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 28.7 bits (61), Expect = 0.86
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 212 LVLCGPSGSGKSTLLKRLLKEFPDKFGFSVSH 307
+ + GP+G+GKSTL+K L+ E + G H
Sbjct: 722 VAILGPNGAGKSTLIKVLIGEVIPQEGKVFKH 753
>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 465
Score = 28.7 bits (61), Expect = 0.86
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +1
Query: 406 RNCNFQWKHLWNKQES 453
R NF W H WN QES
Sbjct: 11 RKSNFCWTHFWNTQES 26
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 215 VLCGPSGSGKSTLLKRLLKE 274
++ GP+GSGKS+L+ LL E
Sbjct: 645 IVIGPTGSGKSSLISALLGE 664
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1254
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +2
Query: 197 KGPRPLVLCGPSGSGKSTLLKRL 265
+ P +VL GP+ +GKSTLL+++
Sbjct: 1015 ESPNMIVLTGPNMAGKSTLLRQV 1037
>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 235
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 218 LCGPSGSGKSTLLKRLLKEFPDKFGFSV 301
L G GSGKSTL L K + ++FG +
Sbjct: 34 LAGGPGSGKSTLCAILAKAWNERFGSEI 61
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 206 RPLVLCGPSGSGKSTLLKRLLKEFP 280
R +V+ G +GSGKST + + L E P
Sbjct: 113 RVIVVVGETGSGKSTQIPQFLNECP 137
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 203 PRPLVLCGPSGSGKSTLLKRLLKE 274
P+ L+L GP G GK+ L K L K+
Sbjct: 125 PKGLLLYGPPGCGKTMLAKALAKQ 148
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 4/29 (13%)
Frame = +2
Query: 203 PRPLVLCGPSGSGKST----LLKRLLKEF 277
PR L++CGP GSGKS+ + RLL+++
Sbjct: 332 PR-LMVCGPKGSGKSSFSRYITNRLLQQY 359
>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
Caf16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +2
Query: 197 KGPRPLVLCGPSGSGKSTLLKRL 265
KG R L L G +G+GKSTLLK L
Sbjct: 29 KGSRTL-LVGANGAGKSTLLKLL 50
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 212 LVLCGPSGSGKSTLLKR-LLKEFPDKF 289
LVL G G+GK+T +KR L EF K+
Sbjct: 12 LVLVGDGGTGKTTFVKRHLTGEFEKKY 38
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 212 LVLCGPSGSGKSTLLKRLLKE 274
+V+CG G GKS+L+ L++E
Sbjct: 6 VVICGDQGVGKSSLISALIQE 26
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +2
Query: 212 LVLCGPSGSGKSTLLKRL 265
+++ GPSGSGKSTL+ L
Sbjct: 35 VMVVGPSGSGKSTLINTL 52
>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 212 LVLCGPSGSGKSTLLKRLLKE 274
+V+ GP GSGK L+ R++KE
Sbjct: 340 IVVQGPRGSGKRDLVDRVVKE 360
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 188 MVQKGPRPLVLCGPSGSGKSTLLKRL 265
+VQK RP++L GP G GK L+ ++
Sbjct: 149 LVQK--RPILLAGPEGIGKKFLITQI 172
Score = 26.2 bits (55), Expect = 4.6
Identities = 9/27 (33%), Positives = 20/27 (74%)
Frame = +2
Query: 209 PLVLCGPSGSGKSTLLKRLLKEFPDKF 289
P+++ GP+ SGK+++++ + K+ KF
Sbjct: 896 PILIQGPTSSGKTSMIEYVAKKTGHKF 922
>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 527
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 637 SLFQAIFLFRITGAESSFQFIYRWW 563
++F +LF +SSF+ I RWW
Sbjct: 169 NIFHGSYLFDEIEKKSSFEIIDRWW 193
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 191 VQKGPRPLVLCGPSGSGKSTLLKRLLKEFPDKFGFSV 301
+++G R L G +GSGK+TLL ++ + P F ++
Sbjct: 287 IREGER-WALTGSNGSGKTTLLAYVVGDHPKLFASNI 322
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 26.6 bits (56), Expect = 3.5
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Frame = +2
Query: 497 IEMEGVKQIKRTDLDPLLVFVMPPSIDELERRLRARN-------TEQEDSLKKRLETARR 655
I E +++I R ++DP++ + + E ER+ +A+ ++E LKK+ E AR+
Sbjct: 685 ISPEELEEIARRNVDPMVSELSERAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARK 744
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 215 VLCGPSGSGKSTLLKRL 265
+ CGPSG+GK+ L K L
Sbjct: 618 LFCGPSGTGKTLLTKAL 634
>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 277
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = +2
Query: 206 RPLVL--CGPSGSGKSTLLKRLLKEFPDK 286
RP +L GP GSGKSTL L E K
Sbjct: 24 RPFILGISGPQGSGKSTLASALDTELTRK 52
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 212 LVLCGPSGSGKSTLLKRLLKEF 277
+ L G SG GKST+++ LL+ F
Sbjct: 613 IALVGESGGGKSTIMRILLRFF 634
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 26.6 bits (56), Expect = 3.5
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 215 VLCGPSGSGKSTLLKRLLKEFPDKFGFS-VSHTTRAPRAGEKNGVHYHFTNLND 373
V+ GP+GSGK+T+ K + +K GF + P+A + H N ND
Sbjct: 18 VVIGPAGSGKTTMAKAV----SEKLGFEYIEGDDLHPKANIEKMSQGHPLNDND 67
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 184 YNGSERASSSGTVRTFRLRQEHVVEAAAERISRQ 285
YNGS A ++ R ++E + + AER+ R+
Sbjct: 68 YNGSAEAGKEKKLQKQRAQEERIRQKEAERLKRE 101
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 212 LVLCGPSGSGKSTLLKRLLKE 274
+++CG +GSGK+T L + L E
Sbjct: 417 VIICGATGSGKTTQLPQFLFE 437
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 26.2 bits (55), Expect = 4.6
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +2
Query: 200 GPRPLVLCGPSGSGKSTLLKRLLKEFPDKFGFSVSHTTRAP--RAGEKNGVHY 352
GPR + G +GSGKS +L L G S+T RAP ++ K G +Y
Sbjct: 116 GPRINFVIGHNGSGKSAILTGL----TICLGAKASNTNRAPNMKSLVKQGKNY 164
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 212 LVLCGPSGSGKSTLLKRLLKEFPDKFGFSVS 304
++L GP G+GKS L K + E F FS+S
Sbjct: 165 ILLYGPPGTGKSYLAKAVATEAGSTF-FSIS 194
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +2
Query: 212 LVLCGPSGSGKSTLLKRL 265
L+L GP SGK TLL RL
Sbjct: 283 LLLLGPPKSGKKTLLSRL 300
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 26.2 bits (55), Expect = 4.6
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Frame = +2
Query: 206 RPLVLCGPSGSGKSTLLKRLLKEFPDKFGFSVSHTTRAPR-AGEKNG-VHYHFTNLNDMS 379
R ++L GP G+GK+ L + + E F FS+S ++ + GE V FT +S
Sbjct: 493 RGMLLFGPPGTGKTMLARAVATESRSVF-FSISASSLTSKFLGESEKLVRALFTLAKKLS 551
Query: 380 TAI----EKGEFIETAIFSGNIYGTSKK 451
+I E + GN + TS++
Sbjct: 552 PSIIFVDEIDSLLSARSSDGNEHETSRR 579
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 203 PRPLVLCGPSGSGKSTLLK 259
PR ++L GP G+GK+ L+K
Sbjct: 168 PRGVLLYGPPGTGKTMLVK 186
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 197 KGPRPLVLCGPSGSGKSTLLK 259
K PR +L GP G+GK+ L K
Sbjct: 327 KIPRGAILSGPPGTGKTLLAK 347
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -3
Query: 153 VVIQFSVSDKITRSGSGY*YLKFTLLPRI 67
V Q ++D RSG Y YLKF L RI
Sbjct: 340 VQTQCPLADNAVRSGMYYFYLKFESLNRI 368
>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 468
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 478 ASTTYIIYCFLACSINVSTENCSFYKF 398
AS T+I Y F + + V + CSFY F
Sbjct: 421 ASATFISYPFQSLAFIVCLKYCSFYFF 447
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +2
Query: 218 LCGPSGSGKSTLLKRLLKEFPDKFGFSV 301
L G SGSGKST++ L++ F D G V
Sbjct: 453 LVGASGSGKSTII-GLVERFYDPIGGQV 479
>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 387
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 511 PFHFNIQHTYFASTTYIIYCFLACSINVS 425
PFH +I H F Y I CF+ + V+
Sbjct: 316 PFHKSINHKRFPMFIYAIGCFINFILRVT 344
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 197 KGPRPLVLCGPSGSGKSTLLKRLLKEFPDKFGFSVS 304
K PR +++ GP G+GK TL+ R + F F ++
Sbjct: 256 KPPRGILMYGPPGTGK-TLMARAVANETGAFFFLIN 290
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 197 KGPRPLVLCGPSGSGKSTLLKRLLKEFPDKFGF 295
K PR ++L GP G+GK+ L + + E F F
Sbjct: 298 KLPRGVLLTGPPGTGKTMLARAVAGEANVPFFF 330
>SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 358
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 212 LVLCGPSGSGKSTLLKRLLKE 274
L++ GPSG+GK T + +L+E
Sbjct: 37 LLVYGPSGAGKKTRVVAILRE 57
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 180 IKSFKNVVRVVIQFSVSDKITR 115
I FK +VRVV++ S SDK R
Sbjct: 389 IVHFKRLVRVVLEASYSDKFYR 410
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 212 LVLCGPSGSGKSTLLKRLL 268
+++ G SGSGKSTL+ LL
Sbjct: 98 VLVLGESGSGKSTLVNTLL 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,852,310
Number of Sequences: 5004
Number of extensions: 58636
Number of successful extensions: 295
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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