Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9c01
         (202 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8YA52 Cluster: Lmo0310 protein; n=3; Listeria monocyto...    32   2.1  
UniRef50_Q21IH4 Cluster: Peptidase S26A, signal peptidase I; n=2...    32   2.8  

>UniRef50_Q8YA52 Cluster: Lmo0310 protein; n=3; Listeria
           monocytogenes|Rep: Lmo0310 protein - Listeria
           monocytogenes
          Length = 358

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +1

Query: 79  GVGKKFTVTFFGYASLFSVTRHLFCIHVYDNKILLFKLKK 198
           GVGK+ TVT   Y    S T  +FCI   D ++++ ++++
Sbjct: 86  GVGKEMTVTHKAYQEAIS-TLKIFCIETLDGEVIILEVEE 124


>UniRef50_Q21IH4 Cluster: Peptidase S26A, signal peptidase I; n=2;
           Gammaproteobacteria|Rep: Peptidase S26A, signal
           peptidase I - Saccharophagus degradans (strain 2-40 /
           ATCC 43961 / DSM 17024)
          Length = 288

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 98  PSHFSVTRHFFPLRAICFVFMSMIIKSF 181
           PS+  +++ FFPL A+ FV  S II+ F
Sbjct: 67  PSYVEISKSFFPLLALVFVVRSFIIEPF 94


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,936,922
Number of Sequences: 1657284
Number of extensions: 2991616
Number of successful extensions: 7739
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7738
length of database: 575,637,011
effective HSP length: 46
effective length of database: 499,401,947
effective search space used: 9988038940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)