Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9c01
(202 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 25 1.0
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 25 1.0
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy... 25 1.4
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 25 1.8
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 1.8
SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway prote... 24 2.4
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p... 24 2.4
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 24 2.4
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 24 2.4
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 23 4.2
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 23 4.2
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos... 23 4.2
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 23 5.5
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 23 5.5
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 23 5.5
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo... 23 7.3
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|... 23 7.3
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 22 9.7
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ... 22 9.7
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 25.4 bits (53), Expect = 1.0
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +3
Query: 36 DISDDTFFEVKLPYRRWKKIYRHIFRLR 119
D++ DT+ +K P + W K++ RL+
Sbjct: 95 DLNKDTYSALKAPLKIWSKLWEDNRRLK 122
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 25.4 bits (53), Expect = 1.0
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 65 ETSLSALEKNLPSHFSVTRHFFPLRAICFVFMS 163
E+ SA E L + +T+H P ++C+ F+S
Sbjct: 164 ESYSSASESPLKPKYRLTKHTQPCTSVCWNFLS 196
>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 1.4
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 97 TVTFFGYASLFSVTRHLFCI-HVYDNKILLFKLKK 198
TVT+ ++ ++ H+F + HVY + I FKLKK
Sbjct: 425 TVTWDEFSREWNKPVHVFLMRHVYHSSISGFKLKK 459
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 24.6 bits (51), Expect = 1.8
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -3
Query: 71 KFHFKKSIVGYIEHFSCSP 15
+ + K S++ YIE SC+P
Sbjct: 170 ELNVKASVISYIEKLSCTP 188
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 24.6 bits (51), Expect = 1.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 81 RWKKIYRHIFRLRVTFFRYAPSVLYSCL 164
RWK IY H+ +L ++ R + SCL
Sbjct: 1259 RWKIIYDHVCKLCLSRSRSLRAASLSCL 1286
>SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway protein
But1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 243
Score = 24.2 bits (50), Expect = 2.4
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 92 NLPSHFSVTRHFFP 133
N+P H SV HF+P
Sbjct: 122 NVPLHISVISHFYP 135
>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 612
Score = 24.2 bits (50), Expect = 2.4
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -3
Query: 110 KNVTVNFFPTPIR 72
KNVT+N PTP R
Sbjct: 64 KNVTINDIPTPFR 76
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 24.2 bits (50), Expect = 2.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 41 IRRYFF*SETSLSALEKNLPSHF 109
+ ++FF +T SA + NL SHF
Sbjct: 365 VSQWFFYRDTKSSATKTNLVSHF 387
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 24.2 bits (50), Expect = 2.4
Identities = 19/43 (44%), Positives = 25/43 (58%)
Frame = +2
Query: 53 FF*SETSLSALEKNLPSHFSVTRHFFPLRAICFVFMSMIIKSF 181
+F S SLS L NL S+F + FF +R + V M +I KSF
Sbjct: 278 WFASPESLSHLHDNLNSYFLL--KFF-VRVLFGVCMILIWKSF 317
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1073
Score = 23.4 bits (48), Expect = 4.2
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = +2
Query: 11 SSVNTR-NV-RYIRRYFF*SETSLSALEKNLPSHFSVTRHFFPLRAICFVFMSMIIKSFC 184
S+ N R NV R+ + F +S +PS FS+ H P I F+ ++ C
Sbjct: 194 SNSNPRINVYRWSKTETFSDASSYITFSIPVPSEFSLASHIIPCSNIPDHFLVLLETKIC 253
Query: 185 L 187
L
Sbjct: 254 L 254
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 23.4 bits (48), Expect = 4.2
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +1
Query: 118 ASLFSVTRHLFC 153
A LF++TRH FC
Sbjct: 13 AFLFAITRHAFC 24
>SPCC338.07c |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 729
Score = 23.4 bits (48), Expect = 4.2
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = -2
Query: 102 DGKFFSNADKEVSLQKKYRRIYRTFLVFTDDR 7
DGK F+ K K++ +++ F + DD+
Sbjct: 499 DGKSFARQKKFALALKRFSTVFKIFDTWADDQ 530
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 23.0 bits (47), Expect = 5.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 125 FFPLRAICFVFMSMIIKSFCLNLKKK 202
F PL F +S + + FCL L+KK
Sbjct: 183 FLPLLLRVFSTLSRLPRLFCLCLQKK 208
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 99 GKFFSNADKEVSLQKKYRRIYRTFLV 22
GK +N KEV +KY + T++V
Sbjct: 190 GKLLTNYLKEVISYRKYNMMEETYIV 215
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 4/22 (18%)
Frame = -3
Query: 83 TPIRKFHFKKSIVG----YIEH 30
TP R FH +++IVG Y++H
Sbjct: 298 TPSRGFHLRQAIVGPQGAYVKH 319
>SPAC25H1.06 |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 22.6 bits (46), Expect = 7.3
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +3
Query: 81 RWKKIYRHIFRLRVT 125
RWKK +H++ L +T
Sbjct: 26 RWKKNSKHLYNLLIT 40
>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
3|||Manual
Length = 834
Score = 22.6 bits (46), Expect = 7.3
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 4 NTIVGEHEKCSIYPTILFLK*NFLIGVGKKFTVTFFG 114
NT++G +C+I IL K + +G K V G
Sbjct: 521 NTMLGVPSQCAISKHILQSKPQYCANLGMKINVKVGG 557
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 22.2 bits (45), Expect = 9.7
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -2
Query: 111 EKCDGKFFSNAD 76
E C KFFSNAD
Sbjct: 212 EFCKQKFFSNAD 223
>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 22.2 bits (45), Expect = 9.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 67 NFLIGVGKKFTVTFFGYASLFS 132
N L+ ++ FG+ASLFS
Sbjct: 142 NILLDYNGNLKISDFGFASLFS 163
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 848,652
Number of Sequences: 5004
Number of extensions: 14410
Number of successful extensions: 61
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 46
effective length of database: 2,132,294
effective search space used: 42645880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -