Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9c01
         (202 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0123 - 13930138-13932471                                         26   4.8  
11_06_0258 + 21750922-21752272,21752971-21753377                       26   4.8  
11_06_0257 + 21746643-21748091                                         26   4.8  
01_07_0338 - 42840890-42841006,42841101-42841136,42841226-428413...    26   4.8  
12_01_0556 - 4514686-4514868,4515168-4515290,4515381-4515617,451...    25   8.4  
02_03_0397 + 18574277-18574618,18574740-18574848,18574854-18575872     25   8.4  
01_06_1201 - 35380338-35380496,35381200-35381322,35381521-353820...    25   8.4  

>12_02_0123 - 13930138-13932471
          Length = 777

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 110 KNVTVNFFPTPIRKFHFKKSIVGYIEHFSCSP 15
           K++     P P+R  H   +I G+I H   SP
Sbjct: 624 KDIKKGEVPVPVRVIHSAPTIAGHINHPVFSP 655


>11_06_0258 + 21750922-21752272,21752971-21753377
          Length = 585

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 84  WKKIYRHIFRLRVTFFRYAPSVLYSC 161
           W   YR   RLR+   +  P +LYSC
Sbjct: 44  WHAAYRTFRRLRLPSPKQPPCLLYSC 69


>11_06_0257 + 21746643-21748091
          Length = 482

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 84  WKKIYRHIFRLRVTFFRYAPSVLYSC 161
           W   YR   RLR+   +  P +LYSC
Sbjct: 44  WHAAYRTFRRLRLPSPKQPPCLLYSC 69


>01_07_0338 -
           42840890-42841006,42841101-42841136,42841226-42841300,
           42841380-42841433,42841703-42841769,42841844-42841900,
           42842163-42842276,42842354-42842455,42842538-42842653,
           42842892-42842975,42843429-42843533,42843732-42843875,
           42843961-42844069,42844149-42844177
          Length = 402

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 104 VTVNFFPTPIRKFHFKKSIVGYIE 33
           + ++F    I K HF  SIV YIE
Sbjct: 35  IGISFPAVSITKLHFPSSIVSYIE 58


>12_01_0556 -
           4514686-4514868,4515168-4515290,4515381-4515617,
           4515747-4516358
          Length = 384

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 86  PTPIRKFHFKKSIVGYIEHFSCSP 15
           PT I K  F + +  Y+EHF+  P
Sbjct: 71  PTYIPKIQFLRYMDDYVEHFNICP 94


>02_03_0397 + 18574277-18574618,18574740-18574848,18574854-18575872
          Length = 489

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 101 TVNFFPTPIRKFHFKKSIV 45
           TVNF PTP+R   F  +IV
Sbjct: 31  TVNFIPTPMRHEDFVLAIV 49


>01_06_1201 -
           35380338-35380496,35381200-35381322,35381521-35382066,
           35382285-35382392,35382695-35383225,35383614-35383743,
           35384225-35385081,35385303-35385408,35387119-35387230,
           35389255-35389347,35389723-35389771,35389859-35389897,
           35390671-35390757,35391613-35391873,35391957-35392166,
           35392413-35393507
          Length = 1501

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 101 TVNFFPTPIRKFHFKKSIVGYIEHFSCSP 15
           T +F+  P++KF +  S +G  E  +C+P
Sbjct: 700 TCSFYSFPVKKFSWVISGIGLSELQNCAP 728


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,858,208
Number of Sequences: 37544
Number of extensions: 75055
Number of successful extensions: 178
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 14,793,348
effective HSP length: 46
effective length of database: 13,066,324
effective search space used: 261326480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)