Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9c01
         (202 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93379-5|CAB07593.3|  351|Caenorhabditis elegans Hypothetical pr...    27   1.4  
U46671-7|AAA85752.1|  194|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z68217-5|CAC70098.1|  166|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z70284-10|CAB54279.1|  351|Caenorhabditis elegans Hypothetical p...    25   5.6  
Z81453-4|CAB03794.1|  283|Caenorhabditis elegans Hypothetical pr...    25   7.4  
L40996-1|AAA86431.1|  593|Caenorhabditis elegans GTP-binding pro...    25   7.4  
AF324489-1|AAK49910.1|  351|Caenorhabditis elegans F44C8.7-like ...    25   7.4  
AF039046-13|AAB94213.1|  551|Caenorhabditis elegans Hypothetical...    25   7.4  
AF016438-4|AAB65894.2|  351|Caenorhabditis elegans Hypothetical ...    25   7.4  
Z81453-6|CAH04639.1|  283|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z68215-1|CAA92450.1|  517|Caenorhabditis elegans Hypothetical pr...    25   9.8  
U80030-10|AAG24167.2|  378|Caenorhabditis elegans Serpentine rec...    25   9.8  
U23411-2|AAC46731.2|  471|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>Z93379-5|CAB07593.3|  351|Caenorhabditis elegans Hypothetical
           protein F21H7.7 protein.
          Length = 351

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 9/41 (21%), Positives = 22/41 (53%)
 Frame = +1

Query: 43  PTILFLK*NFLIGVGKKFTVTFFGYASLFSVTRHLFCIHVY 165
           P ++ +    ++ +  +F + F G   +F+ + H+FC+  Y
Sbjct: 198 PVVIAISDEDVVNIKNRFIIPFIGAHIVFNNSFHIFCLIYY 238


>U46671-7|AAA85752.1|  194|Caenorhabditis elegans Hypothetical
           protein C14E2.6 protein.
          Length = 194

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 6   YDRR*TREMFDISDDTFFEVKLPYRRWKKIYRHIFRLRVTFF 131
           Y +  T + + I D    E  L    WK ++ HIF   + FF
Sbjct: 144 YPKHMTTDNYRICDQAETESCLKGSWWKTMFSHIFMFDMNFF 185


>Z68217-5|CAC70098.1|  166|Caenorhabditis elegans Hypothetical
           protein F58G6.7 protein.
          Length = 166

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -3

Query: 143 WRVTEKSDA*PKNVTVNFFPTP--IRKFHFKKSIVGYIEHF 27
           W + E      K VT+  F     I KFH   S++ +++HF
Sbjct: 78  WNIPETIPLTQKTVTLAPFTRDSLISKFHMASSLLVFVQHF 118


>Z70284-10|CAB54279.1|  351|Caenorhabditis elegans Hypothetical
           protein K07F5.12 protein.
          Length = 351

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 86  EKNLPSH-FSVTRHFFPLRAICFVFMSMIIKSFCLNLKKK 202
           ++N P+  F V  + FP     F+F ++   ++C+ L++K
Sbjct: 223 QQNPPTDSFQVFDYIFPFYTSVFLFSTLYFFAYCVILRRK 262


>Z81453-4|CAB03794.1|  283|Caenorhabditis elegans Hypothetical
           protein B0250.6 protein.
          Length = 283

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 68  TSLSALEKNLPSHFSVTRHFFPLRAICFVFMSMIIKSFCLN 190
           T L ALE+ +  +F +  H +  +   FVF+ +I+ S   N
Sbjct: 99  TFLIALERVIAIYFPIFFHIYRQKLPNFVFLLIILSSELFN 139


>L40996-1|AAA86431.1|  593|Caenorhabditis elegans GTP-binding
           protein protein.
          Length = 593

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 95  NFFPTPIRKFHFKKSIVGYIE 33
           +F P PI+  H K+ +VG ++
Sbjct: 415 DFMPIPIKSIHRKRCLVGIVK 435


>AF324489-1|AAK49910.1|  351|Caenorhabditis elegans F44C8.7-like
           protein protein.
          Length = 351

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 57  FEVKLPYRRWKKIYRHIFRLRVTFFRYA-PSVLYS 158
           F+ K   +  KK+Y HI++ RV   + + P+V+Y+
Sbjct: 81  FKTKSFEKTGKKLYEHIWKNRVETLKVSVPAVVYA 115


>AF039046-13|AAB94213.1|  551|Caenorhabditis elegans Hypothetical
           protein R09B5.4 protein.
          Length = 551

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +1

Query: 82  VGKKFTVTFFGYASLFSV-TRHLFCIHVY-DNKILLFKLKKK 201
           VG + TV  FG ASL S+ ++ +F   +Y  N +L  K  KK
Sbjct: 227 VGLRETVGIFGIASLVSMASKTIFLRAIYISNPLLQVKKDKK 268


>AF016438-4|AAB65894.2|  351|Caenorhabditis elegans Hypothetical
           protein F44C8.7 protein.
          Length = 351

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 57  FEVKLPYRRWKKIYRHIFRLRVTFFRYA-PSVLYS 158
           F+ K   +  KK+Y HI++ RV   + + P+V+Y+
Sbjct: 81  FKTKSFEKTGKKLYEHIWKNRVETLKVSVPAVVYA 115


>Z81453-6|CAH04639.1|  283|Caenorhabditis elegans Hypothetical
           protein B0250.10 protein.
          Length = 283

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 68  TSLSALEKNLPSHFSVTRHFFPLRAICFVFMSMIIKSFCLN 190
           T L ALE+ +  +F +  H +  +   FVF+ +I+ S   N
Sbjct: 99  TLLIALERVIAIYFPIFFHIYRQKLPNFVFLLIILTSELFN 139


>Z68215-1|CAA92450.1|  517|Caenorhabditis elegans Hypothetical
           protein C53B4.1 protein.
          Length = 517

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 159 MNTKQMARNGKK*RVTEKCDGKFFSNADKEVSLQKKY 49
           ++ KQ  +N  K R   +  GKF+SN    V   +K+
Sbjct: 254 LDQKQKYKNASKARKRLRKIGKFYSNEHSTVVANRKF 290


>U80030-10|AAG24167.2|  378|Caenorhabditis elegans Serpentine
           receptor, class w protein136 protein.
          Length = 378

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = +1

Query: 28  KCSIYPTILFLK*NFLIGVGKKFTVTFFGYASLFSVTRH 144
           K   Y TI+F    F +GV    T  F G   +  +  H
Sbjct: 272 KLVFYNTIIFFVAEFPLGVNTSITWFFMGAPGIMMIMSH 310


>U23411-2|AAC46731.2|  471|Caenorhabditis elegans Hypothetical
           protein T25E4.2 protein.
          Length = 471

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 116 TRHFFPLRAICFVFMSMIIKSFCLNL 193
           T HF  L   CF+F  + I  F L +
Sbjct: 386 TSHFIQLYKFCFIFYGIAIIVFILEI 411


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,645,997
Number of Sequences: 27780
Number of extensions: 78344
Number of successful extensions: 219
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 12,740,198
effective HSP length: 46
effective length of database: 11,462,318
effective search space used: 229246360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)