Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9b22
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    36   0.006
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ...    34   0.017
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    33   0.030
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ...    32   0.092
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    30   0.28 
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    29   0.65 
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    28   1.1  
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ...    28   1.1  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    28   1.1  
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    28   1.5  
SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual          28   1.5  
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    27   2.6  
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    26   4.6  
SPCC790.03 |||rhomboid family protease|Schizosaccharomyces pombe...    26   6.1  

>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 35.9 bits (79), Expect = 0.006
 Identities = 15/61 (24%), Positives = 36/61 (59%)
 Frame = +3

Query: 354 SFYIEISWLHMEYRPWRMLMQIISIPGVIGTIAMAFLNESPKFLLSRDQTVKALDTLKSI 533
           ++ I+ ++ H+ +  WR ++ +  +P       + +L ESP+ L+ ++++ +A +TL  I
Sbjct: 232 AYGIDTAFEHV-HNGWRWMVGLAMVPAAFQLFILIWLPESPRLLVKKERSQEAYNTLARI 290

Query: 534 Y 536
           Y
Sbjct: 291 Y 291


>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 547

 Score = 34.3 bits (75), Expect = 0.017
 Identities = 16/42 (38%), Positives = 28/42 (66%)
 Frame = +3

Query: 399 WRMLMQIISIPGVIGTIAMAFLNESPKFLLSRDQTVKALDTL 524
           WR+ M I  + G+I  I ++FL ESP++L++  +  +ALD +
Sbjct: 178 WRVSMGINLLWGIIMFIGISFLPESPRYLIAIGKDEEALDIM 219


>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 33.5 bits (73), Expect = 0.030
 Identities = 16/42 (38%), Positives = 27/42 (64%)
 Frame = +3

Query: 399 WRMLMQIISIPGVIGTIAMAFLNESPKFLLSRDQTVKALDTL 524
           WR+ M I  + G+I  I ++FL ESP++L+S  +  +AL  +
Sbjct: 178 WRVSMGINLLWGIITFIGISFLPESPRYLISVGRDEEALQIM 219



 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 231 FVLVGESTPKRHRSRFMFLLASATMCVQFIICSFALPVFKHSFYIEISWL 380
           +V+VGES P R+RS+   +  +      F+I SF  P   +S   +  ++
Sbjct: 388 YVIVGESYPIRYRSKCAAVATTGNWLWGFLI-SFFTPFITNSIGFKYGYI 436


>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 31.9 bits (69), Expect = 0.092
 Identities = 13/42 (30%), Positives = 28/42 (66%)
 Frame = +3

Query: 399 WRMLMQIISIPGVIGTIAMAFLNESPKFLLSRDQTVKALDTL 524
           WR+ + I  + G+I  + ++FL+ESP++L+S  +  +A+  +
Sbjct: 178 WRVSIGINLLWGIITLVGVSFLSESPRYLVSIGKDDEAIQVM 219



 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +3

Query: 231 FVLVGESTPKRHRSRFMFLLASATMCVQFIICSFALPVFKHSFYIEISWL 380
           +V+VGES P R+RS+   +  ++     F+I SF  P   +S   +  ++
Sbjct: 388 YVIVGESYPIRYRSKCAAVATTSNWLWNFLI-SFFTPFITNSIGFKYGYI 436


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +3

Query: 231 FVLVGESTPKRHRSRFMFLLASATMCVQFIICSFALPVFKHSFYIEISWL 380
           +V+VGES P R+RS+   +  SA     F+I SF  P   +S   +  ++
Sbjct: 358 YVIVGESYPVRYRSKCAAVATSANWFWNFLI-SFFTPFITNSIGFKYGYI 406



 Score = 29.1 bits (62), Expect = 0.65
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = +3

Query: 399 WRMLMQIISIPGVIGTIAMAFLNESPKFLLSRDQTVKAL 515
           WR+ + I  + G+I  + + FL ESP++L++  +  +AL
Sbjct: 148 WRISIGINLLWGIITLVGIIFLPESPRYLIAIGKDDEAL 186


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +3

Query: 399 WRMLMQIISIPGVIGTIAMAFLNESPKFLLSRDQTVKALDTL 524
           WR+ + I  + G+I  I + FL ESP++L+   +  +A+  L
Sbjct: 182 WRVSIGINLLWGIITMIGILFLPESPRYLIQVGKDEEAVRVL 223



 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +3

Query: 231 FVLVGESTPKRHRSRFMFLLASATMCVQFIICSFALPVFKHS 356
           +V+VGES P R+RS+   +  ++     F+I SF  P  + S
Sbjct: 392 YVIVGESYPVRYRSKCAAVATASNWLWNFLI-SFFTPFIQAS 432


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +3

Query: 390 YRPWRMLMQIISIPGVIGTIAMAFLNESPKFLLSRDQTVKALDTLKSIY 536
           ++ WR++  I + P +   I++ +  ESP++LL  +   K    L  I+
Sbjct: 236 HQGWRIMFGIGAAPALGQLISLFWTPESPRYLLRHNHVEKVYKILSRIH 284


>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +3

Query: 231 FVLVGESTPKRHRSRFMFLLASATMCVQFIICSFALPVFKHSFYIEISWLH 383
           +V+VGE+ P R+RS+   +  S      F++ SF  P   +S   ++ +++
Sbjct: 388 WVIVGETFPIRYRSKCAAVATSGNWLGNFMV-SFFTPFISNSIGFKLGYIY 437



 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 399 WRMLMQIISIPGVIGTIAMAFLNESPKFLLSRDQTVKAL 515
           WR    I  + G+   + + FL ESP++L+ + +  +AL
Sbjct: 178 WRTSFGINILWGIFLMVGVLFLPESPRYLIYKGRDEEAL 216


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
 Frame = +3

Query: 285 LLASATMCVQFIICSFALPVF--KHSFYIEISWLHMEYR-PWRMLMQIISIPGVIGTIAM 455
           L+ S   C+QF   S +LP+F    +  I +S L + +R  W + + +++   +I  + +
Sbjct: 210 LVNSVDRCIQFYEKSISLPMFHIAENLAISLSCLIISFRYSWSLTLVVLASYPII-ILVV 268

Query: 456 AFLNE--SPKFLLSRDQTVKALDTL-KSI 533
            F+N   S  +   R  + KA   L KSI
Sbjct: 269 GFINSFLSSAYEKDRKSSEKAASILEKSI 297


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +3

Query: 399 WRMLMQIISIPGVIGTIAMAFLNESPKFLLSRDQTVKAL 515
           WR    I  + G++  + + FL ESP++L+ + +  +AL
Sbjct: 178 WRTSFGINMLWGILLMVGVLFLPESPRYLIYKGRDEEAL 216



 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +3

Query: 231 FVLVGESTPKRHRSRFMFLLASATMCVQFIICSFALPVFKHSFYIEISWLH 383
           +V+VGE+ P R+RS+   +  S      F+I SF  P   ++   ++ +++
Sbjct: 388 WVIVGETFPIRYRSKCASVATSGNWLGNFMI-SFFTPFINNAIGFKLGYIY 437


>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -2

Query: 418 ICISIRHGRYSMCNHDISM*NECLKTGRAKEQIINWTHIVALARRNMNLLLCLF 257
           IC+  R  R  +  +DI   N  L      + ++NW +I +    NM+ + C++
Sbjct: 31  ICVKDRVQRDFITENDIVTFN--LSNQSVTKDLVNWAYIFSWVLSNMDAVACIY 82


>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +3

Query: 231 FVLVGESTPKRHRSRFMFLLASATMCVQFIICSFALPVFKHS 356
           +V+VGES P R+RS+   +  ++     F+I SF  P   +S
Sbjct: 390 YVIVGESYPIRYRSKCAAVATASNWFWNFMI-SFFTPFISNS 430



 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 399 WRMLMQIISIPGVIGTIAMAFLNESPKFLLSRDQTVKALDTL 524
           WR+ + I  + G++    M FL ESP++L  + +  + +  L
Sbjct: 180 WRVPIGINLLWGILMFFGMLFLPESPRYLAVKGRNEECMKIL 221


>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 475 GLSLRKAIAIVPITPG-ILMICISIRHGRYSMCNH 374
           G+S  K    V + PG +  +C   R GRY++C H
Sbjct: 79  GVSSLKPGDPVAVEPGCVCRLCDYCRSGRYNLCPH 113


>SPCC790.03 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 248

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/68 (19%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = -2

Query: 304 IVALARRNMNLLLCLFGVLS--PTSTKAAALADDVLELIITYSCFLAFNNVVFVIIYYLS 131
           I+     ++++L  +F  +S  P  ++       +  +++T   +  F  ++ +I+Y+  
Sbjct: 56  IITYVTLHLSMLHIVFNFVSLLPAMSQFEKKQGTLACILVTVIPYTLFPGIMHLIVYHFF 115

Query: 130 LRKSFMTI 107
           LRK +++I
Sbjct: 116 LRKDYVSI 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,882,478
Number of Sequences: 5004
Number of extensions: 59945
Number of successful extensions: 169
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)