Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9b20
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    27   1.9  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    27   2.6  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    27   3.4  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    26   4.5  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    26   4.5  

>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 21/77 (27%), Positives = 38/77 (49%)
 Frame = +1

Query: 190 LLIDWVKLKDKGSKFCKGISSVKLHEYNDDYYPHLLKPLTEGLVEIIDSFQNIIEGIKIL 369
           ++I   ++K K   +  GISSV  +     YY  ++  +    VE  +    I  G+K+L
Sbjct: 319 IIIPQNQVKRKHDIYIAGISSVH-NVCPKGYYLAIISTI----VETANPLSEIAPGLKLL 373

Query: 370 KNQLDSLSKLQSTDQPV 420
              ++S S++Q   +PV
Sbjct: 374 GPVVESFSRVQEIYEPV 390


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1147

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 8/25 (32%), Positives = 19/25 (76%)
 Frame = +1

Query: 322  EIIDSFQNIIEGIKILKNQLDSLSK 396
            E++ + +++ + + +LKNQ+D L+K
Sbjct: 1079 EVLSAIKSLSDSVMLLKNQIDDLAK 1103


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/50 (24%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +1

Query: 319 VEIIDSFQNIIEGIKILKNQLDSLSKLQSTDQPVI-LTWSVGRIHACVKN 465
           V+ +   + +++ +  + + + S  +++S  + V  L WS+ R+ AC+KN
Sbjct: 214 VQYLPDSEILLDMVSAIADAIASKEQVESGTKNVYELHWSMSRLLACIKN 263


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 322 QLSPQSMASIGADNNHHYTRAVSLMRSL 239
           +LS QS  ++ AD N HY RA+  ++ L
Sbjct: 263 KLSEQS-GNVTADTNEHYDRAMQYLKQL 289


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 563 LT*TSMRLSSLQCAMFSVTIFFSL 492
           LT  + RL  L C +F V+ FFSL
Sbjct: 107 LTGVAARLGYLSCGLFFVSYFFSL 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,673,372
Number of Sequences: 5004
Number of extensions: 53657
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)