Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9b20
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56965-2|AAB52667.3|  581|Caenorhabditis elegans Hypothetical pr...    28   7.2  
L23651-4|AAU87828.2|  294|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AF099920-10|AAO91710.1| 1051|Caenorhabditis elegans Transbilayer...    27   9.6  
AF099920-9|AAK29849.1| 1222|Caenorhabditis elegans Transbilayer ...    27   9.6  
AC006708-1|AAL77186.1|  129|Caenorhabditis elegans Hypothetical ...    27   9.6  
AC006648-12|AAF39861.4|  418|Caenorhabditis elegans Btb and math...    27   9.6  

>U56965-2|AAB52667.3|  581|Caenorhabditis elegans Hypothetical
           protein C15H9.5 protein.
          Length = 581

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 552 FNEAFISTVCYVFCHNFF*FVLL 484
           F + +I  V Y++C  FF F+LL
Sbjct: 442 FRQFYILVVVYIYCTRFFGFILL 464


>L23651-4|AAU87828.2|  294|Caenorhabditis elegans Hypothetical
           protein C29E4.13 protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 40  ISNLSNKFVMSKTPIKELAINFVPREITTPNKD 138
           IS  S +   ++  ++ +AINF P  +TTP++D
Sbjct: 254 ISLDSCQIPQTRPELQNIAINFRPMSVTTPHQD 286


>AF099920-10|AAO91710.1| 1051|Caenorhabditis elegans Transbilayer
            amphipath transporters(subfamily iv p-type atpase)
            protein 2, isoform b protein.
          Length = 1051

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 163  FSHVSSFHSLLIDWVKLKDKGSKFCKGISSVKLHEYNDDYYPHLLKPLTE 312
            FSH   F  L++     K+  +   K  S+ K+H  +DD  P L+  + +
Sbjct: 919  FSHSQGFGELILKGKLFKNVENLRGKNNSNAKIHPTSDDLQPMLISSVPD 968


>AF099920-9|AAK29849.1| 1222|Caenorhabditis elegans Transbilayer
            amphipath transporters(subfamily iv p-type atpase)
            protein 2, isoform a protein.
          Length = 1222

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 163  FSHVSSFHSLLIDWVKLKDKGSKFCKGISSVKLHEYNDDYYPHLLKPLTE 312
            FSH   F  L++     K+  +   K  S+ K+H  +DD  P L+  + +
Sbjct: 1090 FSHSQGFGELILKGKLFKNVENLRGKNNSNAKIHPTSDDLQPMLISSVPD 1139


>AC006708-1|AAL77186.1|  129|Caenorhabditis elegans Hypothetical
           protein Y110A7A.20 protein.
          Length = 129

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 256 KLHEYNDDYYPHLLKPLTEGLVEIIDSFQNIIEGIKILKNQLDSLSKLQ-STDQPVILTW 432
           K  E+ND       +  T GL++ I+ F N++E  KI    + +  +   + D PV+L  
Sbjct: 36  KSSEFNDQLKN--FQTTTGGLIDSIEEFANVVETEKIRAMMVRNTQERDLAEDDPVLLQM 93

Query: 433 SV 438
           ++
Sbjct: 94  TI 95


>AC006648-12|AAF39861.4|  418|Caenorhabditis elegans Btb and math
           domain containingprotein 19 protein.
          Length = 418

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 235 CKGISSVKLHEYNDDYYPHLLKPLTEGLVEIIDSFQNI 348
           C    S K   +ND+   + L+ L    +E IDS  NI
Sbjct: 356 CANFLSEKSENFNDELTNYQLENLVNNCIEKIDSIDNI 393


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,212,007
Number of Sequences: 27780
Number of extensions: 282275
Number of successful extensions: 700
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)