Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9b15
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    27   2.6  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   3.4  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   4.5  
SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta 5-->4-i...    25   7.9  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   7.9  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    25   7.9  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    25   7.9  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    25   7.9  

>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 419 ISQCATLIFVTDKKNTILWEPLPWH-DLVK 505
           I+ CA  + V D +NT+L  PL  H DL K
Sbjct: 87  IALCAAYLIVIDSRNTVLSYPLMKHRDLSK 116


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 275 WFPLPYLLFPRFELRKAS 222
           + PLP+LL PRF+ R +S
Sbjct: 555 FIPLPFLLGPRFKFRSSS 572


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 412 NPFLPLPVPRLRTQFPMQIFPHHALWCSVKVYP 314
           +PFL  P+PRL  Q     F  + L   VK++P
Sbjct: 832 SPFLSKPLPRLLNQVNYYQFIRNKLLKDVKLHP 864


>SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta
           5-->4-isomerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 314 GEVPPYGLAFPRP 276
           G VPPY + FPRP
Sbjct: 258 GHVPPYIIKFPRP 270


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 382 LRTQFPMQIFPHHALWCSVKVYP 314
           L +  P  +F H A+W S  +YP
Sbjct: 189 LNSTTPFSLFEHEAVWKSNVIYP 211


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 458 KNTILWEPLPWHDLVKFRINSVGL 529
           +N  LWE   W D VK  ++S+ L
Sbjct: 561 ENGSLWEYANWKDSVKSNVSSISL 584


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 292  KPYGGTSPGIPSQSTTRRGVGISAWGI 372
            K Y  + PGI +    RRG  +  WGI
Sbjct: 2052 KSYETSVPGIYAAGDCRRGQSLVVWGI 2078


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 457 LVCDKNKGSTLRNNRNPFLPLP 392
           ++ DKNK ST+R + N  +P P
Sbjct: 443 VIKDKNKDSTVRASNNENIPTP 464


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,906,386
Number of Sequences: 5004
Number of extensions: 62525
Number of successful extensions: 169
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)