Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9b15
(694 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0082 + 12059692-12060209,12060484-12060973 33 0.16
09_02_0098 + 4235938-4237113 31 1.1
01_05_0705 + 24424457-24424948,24425520-24425624,24426097-244262... 29 3.5
12_02_0299 - 17051570-17052474,17053542-17053755 28 6.1
04_03_0939 + 20934694-20935050,20936324-20936519,20936645-20937708 28 6.1
04_01_0464 + 6006021-6006082,6006249-6006519 28 6.1
02_03_0020 - 13996688-13996785,13997168-13997217,13997516-139976... 28 6.1
08_01_0576 - 5114636-5115151,5115254-5116183,5116898-5117614,511... 28 8.1
05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,753... 28 8.1
03_02_0296 + 7191455-7191615,7192031-7192071,7192156-7192741,719... 28 8.1
>08_02_0082 + 12059692-12060209,12060484-12060973
Length = 335
Score = 33.5 bits (73), Expect = 0.16
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +3
Query: 300 RRHFPGYTFTEHHKAWCGNICMG 368
RRH P TF+E H+A+C ICMG
Sbjct: 188 RRH-PDLTFSEVHEAFCNGICMG 209
>09_02_0098 + 4235938-4237113
Length = 391
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -3
Query: 320 IPGEVPPYGLAFPRPWFPLPYL-LFP 246
IPG +PP G ++P P P P L LFP
Sbjct: 202 IPGFLPPPGFSYPEPMGPPPLLSLFP 227
>01_05_0705 +
24424457-24424948,24425520-24425624,24426097-24426207,
24426675-24426857,24427066-24427192,24427336-24427397,
24427638-24427724,24428703-24428789,24429210-24429323,
24429507-24429635,24429834-24429896,24430333-24430494,
24430611-24430729,24430786-24431794
Length = 949
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +1
Query: 229 LRSSNRGNSKYGSGNQGLGKAKPYGGTSPGIPSQSTTR 342
L + N + GN LG P GG S G S STT+
Sbjct: 864 LMAVNSTGNYLNQGNSALGFGNPIGGRSTGSLSSSTTQ 901
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = -3
Query: 317 PGEVPPYGLAFPRPWF-PLPYLLFP 246
P PP PRPWF P+P+L P
Sbjct: 211 PWPWPPIPFCTPRPWFPPIPFLTPP 235
>04_03_0939 + 20934694-20935050,20936324-20936519,20936645-20937708
Length = 538
Score = 28.3 bits (60), Expect = 6.1
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = +1
Query: 208 HTAGCDALRSSNRGNSKYGSGNQGLGKAKPYGGTSPGIPSQSTTRRGVGISAWGIVFLVV 387
H LR+ R + K +G G+A+P G PG+P + RRG A L+
Sbjct: 327 HDRYSSILRAIKRSHGKVARKLEG-GEARPEG--LPGVPRRGVRRRGGASVAVAAHLLLF 383
Query: 388 ALVV 399
L+V
Sbjct: 384 GLLV 387
>04_01_0464 + 6006021-6006082,6006249-6006519
Length = 110
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 253 SKYGSGNQGLGKAKPYGGTSPGIPSQSTTRR 345
S+ G+G+ G G G T PG+ + RR
Sbjct: 49 SERGTGDHGAGSGTEQGATEPGVAGRGELRR 79
>02_03_0020 -
13996688-13996785,13997168-13997217,13997516-13997619,
13997664-13997764,13998436-13998505,13998604-13999422,
14000894-14001052
Length = 466
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -3
Query: 407 IPATTSATTKNTIPHADIPTPRLVVLCEGIPGEVPPY 297
I T+ N +P+ D+P +LV + + +PG+ P Y
Sbjct: 313 ISTTSLCEDHNHLPN-DVPLVKLVTINKALPGDTPDY 348
>08_01_0576 -
5114636-5115151,5115254-5116183,5116898-5117614,
5119630-5119746,5119930-5120295,5121365-5121634
Length = 971
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -3
Query: 320 IPGEVPPYGLAFPRPWFPLPYL 255
+P VPPYGL P FPLP L
Sbjct: 735 VPPAVPPYGLQ-SMPGFPLPSL 755
>05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,
7535889-7535932,7536042-7536146,7536223-7536344,
7536807-7536894,7536966-7537052,7537718-7537786,
7537859-7538188,7539777-7539824,7540003-7540069,
7540150-7540208,7541220-7541453,7541536-7541601,
7541684-7541883,7542104-7542197,7542295-7542414,
7542596-7542703,7542808-7542871,7543378-7543409,
7546049-7548007
Length = 1407
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 377 NTIPHADIPTPRLVVLCEGIPGEVPPYGLAFPRPW 273
+T+P + +LV +C G P +V +GL F W
Sbjct: 928 STVPPEEFEVWKLVDICFGDPNKVSKHGLYFKVRW 962
>03_02_0296 +
7191455-7191615,7192031-7192071,7192156-7192741,
7193307-7193444,7193572-7193728,7193848-7194332,
7194867-7195086
Length = 595
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 407 WVSIISQCATLIFVTDKKNTILWEPLPWHDLVKF 508
W SII+ C T++ +T TIL L +D VK+
Sbjct: 232 WFSIINSCVTVLLLTGFLATILMRVLK-NDFVKY 264
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,006,280
Number of Sequences: 37544
Number of extensions: 396496
Number of successful extensions: 1028
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -