Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9b15
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53153-1|AAC69039.4|  715|Caenorhabditis elegans Hypothetical pr...    31   0.78 
Z71265-5|CAA95836.1|  481|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    28   5.5  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    28   5.5  
Z75543-4|CAA99871.1|  383|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AL021497-3|CAA16405.1|  613|Caenorhabditis elegans Hypothetical ...    27   9.6  

>U53153-1|AAC69039.4|  715|Caenorhabditis elegans Hypothetical
           protein T19A5.3a protein.
          Length = 715

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 247 GNSKYGSGNQGLGKAKPYGGTSPGIPS 327
           G   +G G  G G   P+GG +P  PS
Sbjct: 492 GGGGFGGGGGGFGSGSPFGGAAPSPPS 518


>Z71265-5|CAA95836.1|  481|Caenorhabditis elegans Hypothetical
           protein M05B5.6 protein.
          Length = 481

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/59 (23%), Positives = 28/59 (47%)
 Frame = -1

Query: 181 SKSLVSSFLSGVYRSINQLFLICKTAVQSALLKNILNTIVKKFTIHY*MYMVK*IYFCL 5
           S++L   FL  ++  I  +FL+ K  +++ + K++    +  F  +   YM    Y  L
Sbjct: 113 SRNLFKDFLITIFTGIFFMFLVLKGTIKARITKSVSTWFIVAFCFNIFTYMATLAYVWL 171


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
            lineage protein 13 protein.
          Length = 2248

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 223  DALRSSNRGNSKYGSGNQGLGKAKP 297
            +AL  S  GN+K+GS N   G+A+P
Sbjct: 1819 NALSMSQFGNAKHGSANHSHGQAQP 1843


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
            protein LIN-13 protein.
          Length = 2248

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 223  DALRSSNRGNSKYGSGNQGLGKAKP 297
            +AL  S  GN+K+GS N   G+A+P
Sbjct: 1819 NALSMSQFGNAKHGSANHSHGQAQP 1843


>Z75543-4|CAA99871.1|  383|Caenorhabditis elegans Hypothetical
           protein K01D12.4 protein.
          Length = 383

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/69 (21%), Positives = 31/69 (44%)
 Frame = -1

Query: 253 YFLDLSYAKRRILQYDLKQGQLKTSKSLVSSFLSGVYRSINQLFLICKTAVQSALLKNIL 74
           YF  +S+A      Y   Q  +      +  F++    ++   F  C + V S +++ +L
Sbjct: 265 YFCFISFATIGFGDYVSNQQDVTRMSPDLYRFVNFCLLTLGACFFYCLSNVSSIVVRQLL 324

Query: 73  NTIVKKFTI 47
           N ++KK  +
Sbjct: 325 NWMIKKMDV 333


>AL021497-3|CAA16405.1|  613|Caenorhabditis elegans Hypothetical
           protein Y51A2D.5 protein.
          Length = 613

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +1

Query: 361 AWGIVFLVVALVVAGMGFYYFSMCYPYFCHRQEKYHIMGT 480
           AW  + +++  +  G+G  + SM  P +       H+ GT
Sbjct: 116 AWTKIVMLIGRIFLGVGIGFASMVVPVYLGEASPTHVRGT 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,212,908
Number of Sequences: 27780
Number of extensions: 361853
Number of successful extensions: 1061
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)