Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9b10
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0928 + 26024589-26024645,26024900-26024956,26025464-260257...   107   8e-24
02_05_0759 + 31545473-31546204                                         62   4e-10
03_05_1080 + 30229828-30230707,30230861-30231110,30231265-30231499     30   2.0  
03_05_1054 + 29992101-29993032,29995378-29995401,29996790-29997423     28   6.0  
03_02_0358 + 7784067-7784128,7784239-7785040,7785513-7785617,778...    28   6.0  
10_03_0019 - 7123502-7123673,7124145-7124226,7124228-7124394,712...    28   7.9  

>06_03_0928 +
           26024589-26024645,26024900-26024956,26025464-26025707,
           26026126-26026238,26026675-26026761,26026843-26026962
          Length = 225

 Score =  107 bits (257), Expect = 8e-24
 Identities = 58/180 (32%), Positives = 98/180 (54%), Gaps = 2/180 (1%)
 Frame = +2

Query: 137 RSLSTSVA--SAQMVKPPVQVFGLEGRYASALFSAASKTKALDIVEKELGQFQQSIKTDA 310
           R  ++ VA  + + +K P  ++G  G YASALF  A+K   LD VE E+    ++ K   
Sbjct: 23  RGFASQVAKPTGKDIKVPEALYGGTGNYASALFLTAAKANLLDKVETEIRDVVEASKKSP 82

Query: 311 KLKEFIINPTLKRSMKVDALKHVANKISLSPTTGNLLGLLAENGRLDKLEAVINAFKIMM 490
              +FI + ++ +  +V A+  +  +   S  T N L +LA+NGRL  ++ +   F  + 
Sbjct: 83  LFSQFIKDLSVPKETRVKAITEIFAEAGFSDVTKNFLAVLADNGRLKHIDRIAERFVDLT 142

Query: 491 AAHRGEVTCEVVTAKPLDQAQRQNLEAALKKFLKGNETLQLTAKVDPSLIGGMVVSIGDK 670
            AH+GEV   V T  PL + + + L+  L+  L  N+T+ +  K+D S++GG+V+  G K
Sbjct: 143 MAHKGEVKVLVRTVIPLPEKEEKELKETLQDILGKNKTILIEQKIDYSIMGGLVIQFGQK 202


>02_05_0759 + 31545473-31546204
          Length = 243

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 2/153 (1%)
 Frame = +2

Query: 212 YASALFSAASKTKALDIVEKELGQFQQSIKTDAKLKEFIINPTLKRSMKVDALKHVANKI 391
           YA+AL   AS+   L+    +L + ++    +A + EF  NPT+ R  K   +  +A   
Sbjct: 64  YATALSEVASENGTLEATVSDLEKLEKIFAEEA-IAEFFDNPTVPRDEKAQLIDEIAKSS 122

Query: 392 SLSPTTGNLLGLLAENGRLDKLEAVINAFKIMMAAHRGEVTCEVVTAKPLDQAQRQNLEA 571
            L     N L ++ +NGR   +  ++  F+    +  G    EV T   + Q + Q+L  
Sbjct: 123 ELQAHVVNFLNVVVDNGRAGLMTQIVREFENAFNSLTG---TEVATVTSVVQLESQDLAQ 179

Query: 572 ALKKF--LKGNETLQLTAKVDPSLIGGMVVSIG 664
             ++   L G + +++  ++DP LI G  +  G
Sbjct: 180 IAQQVQNLTGAKNVRVKTRIDPELIAGFTIQYG 212


>03_05_1080 + 30229828-30230707,30230861-30231110,30231265-30231499
          Length = 454

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -3

Query: 495 AAIIILKALMTASSLSKRPFSASNPSRLPVVG 400
           AA+ +L+    A+++ +RP +   P RLPV+G
Sbjct: 15  AAVALLQLAKVAATMRRRPRTPPGPWRLPVIG 46


>03_05_1054 + 29992101-29993032,29995378-29995401,29996790-29997423
          Length = 529

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +2

Query: 521 VVTAKPLDQAQRQNLEAALKKFLKGNETLQLTAKVDPSLIGGMVVSIG 664
           V +A  LD  Q + +   +++ + G  +L +   VDPSLI G VV  G
Sbjct: 449 VSSAVELDARQTELIARKMRR-ITGFASLTIENVVDPSLIAGFVVCYG 495


>03_02_0358 +
           7784067-7784128,7784239-7785040,7785513-7785617,
           7785835-7786194
          Length = 442

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 527 TAKPLDQAQR-QNLEAALKKFLKGNETLQLTAKVDPSLIGGM 649
           T  P+D A R + +E+ L+  L+G      T   DPS  G +
Sbjct: 170 TGAPIDDAARVRRIESRLRHVLRGGARCARTVLADPSAAGNL 211


>10_03_0019 -
           7123502-7123673,7124145-7124226,7124228-7124394,
           7124569-7125182
          Length = 344

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/94 (22%), Positives = 43/94 (45%)
 Frame = +2

Query: 326 IINPTLKRSMKVDALKHVANKISLSPTTGNLLGLLAENGRLDKLEAVINAFKIMMAAHRG 505
           ++ PT  R ++   L+ +A+ + L+P+   LL L+ E+G   +  A +     +M  H  
Sbjct: 81  VVTPTRARPLQAYYLRRLAHTLRLAPSP--LLWLVVESGAATRDTAALLRGCGVMYRHLS 138

Query: 506 EVTCEVVTAKPLDQAQRQNLEAALKKFLKGNETL 607
               +    +P  + +RQ+  A   +  + N  L
Sbjct: 139 SPVPDAPQDRPRRRGRRQDRPAVDSRARQRNTAL 172


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,132,675
Number of Sequences: 37544
Number of extensions: 365450
Number of successful extensions: 970
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)