Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9b08
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    29   0.67 
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    28   1.2  
SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces pom...    27   2.0  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    27   2.0  
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc...    27   2.7  
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    27   3.6  
SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.2  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    26   6.2  

>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 22/62 (35%), Positives = 30/62 (48%)
 Frame = +3

Query: 81   GQAGAFEKKNEKNPGKLREKRFNPYSSDDKPAKQHKVGDKKPDIELENGSGTSESSTVVK 260
            G+    +KK +    +L+EK+F P S   KP K H V     D+E+EN     E S  V 
Sbjct: 1090 GELVVSKKKKKDLIVELKEKKFQPIS---KPKKGHLV-----DLEVENALAEEEQSGDVS 1141

Query: 261  ID 266
             D
Sbjct: 1142 QD 1143


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +3

Query: 99  EKKNEKNPGKLREKRFNPYSSDDKPAKQHKVGDKKPDIELENGSGTSESSTVVKIDTV-N 275
           +  ++K+PGKL  K      S   P  + K  +  P  ++E  +  S+ S ++ +DT+ N
Sbjct: 514 DNSSQKSPGKLSSKGLLNSFSPISPFSKSKSHNHHPSSQVEKSTSNSKGS-MLPLDTLYN 572

Query: 276 PIHALKLPKNITYY 317
              + +L +++  Y
Sbjct: 573 NKLSFRLDESLVRY 586


>SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 177

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
 Frame = +1

Query: 22  NTAKSVIKKIPSTTKNTN--IQGKQELLRKKMRRIPESSEKNVLIHIRAMTNLLSSIK*E 195
           +TA + +   P T+KN    ++ +   +RK+   + E ++KN+    ++MT+ +  ++  
Sbjct: 107 STAATFMFCFPKTSKNIGAFVEKRFPAIRKQRMLVLEQTQKNIQNAQKSMTSAVEGVQKH 166

Query: 196 IKNLTSN*KMD 228
            +N     K D
Sbjct: 167 YENAVKKIKGD 177


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 24/80 (30%), Positives = 36/80 (45%)
 Frame = +3

Query: 300 KNITYYDSSDHSVLKELFLVKMPSDFYKFFDCLNTDDAIVKICSSVNLELIGPFELLLGK 479
           ++I+   SS++++   L     PSD   F D L     + K  SS  ++       L  K
Sbjct: 94  EDISIGTSSENAIPFVLRTFIQPSD--SFLDLLAKVCDLEKEGSSDAVDFSDLINFLNAK 151

Query: 480 LPQLDDKELYLVHWRFFYDP 539
           L + DD    LVH RF+  P
Sbjct: 152 LSKKDDPRKTLVHLRFYNAP 171


>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 438

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +3

Query: 168 KPAKQHKVGDKKPDIELENGSGTSESSTVVKIDT--VNPIHALKLPKNITYYDSSD 329
           KP  +      K D+E+E  +G  E++  ++ DT  V  I      K     DSSD
Sbjct: 41  KPVAKETTVLTKKDVEVEEANGVEEAAETIESDTKEVQNIKPKSKKKKKKLNDSSD 96


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 55  STTKNTNIQGKQELLRKKMRRIPESSEKNVLIHIRAMTNLLSSIK 189
           S  K  N++GKQ+LL  +  ++ E        H+  +  LLS ++
Sbjct: 231 SAKKLLNVEGKQKLLASEFLKLGERPGGFFRTHLITLYELLSEVR 275


>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 455

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/59 (22%), Positives = 27/59 (45%)
 Frame = +3

Query: 99  EKKNEKNPGKLREKRFNPYSSDDKPAKQHKVGDKKPDIELENGSGTSESSTVVKIDTVN 275
           E+KNEKNP +   +     ++     +QH   ++         +  +ES+T   ++ +N
Sbjct: 62  EEKNEKNPIEEANEENESVAATSNERQQHDASNQPSQAAQTTINKNTESATPKTVNEIN 120


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +3

Query: 324 SDHSVLKELFLVKMPSDFYKFFDCLNTDDAIVKI 425
           +D  +L  +    + S +Y+F++C  T DA +++
Sbjct: 881 ADDKLLLPVSWYNLGSSYYRFYECDTTKDATLQV 914


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,941,827
Number of Sequences: 5004
Number of extensions: 63200
Number of successful extensions: 217
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)