Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9b08
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1707 + 28866054-28866065,28866185-28866269,28866398-28867149     34   0.099
12_02_1096 + 26050224-26051058,26051599-26051831,26051940-260522...    31   0.70 
05_01_0601 + 5390484-5391692                                           31   0.70 
11_01_0373 + 2826646-2826676,2827010-2827268,2828325-2828415           29   2.8  
07_01_0463 + 3502708-3503535                                           29   2.8  
11_06_0087 - 19919224-19922304                                         29   3.7  
11_06_0511 - 24434007-24436814                                         29   4.9  
08_02_0584 - 19010345-19010656,19010959-19011018                       29   4.9  
01_05_0265 + 20188160-20188211,20188291-20189019,20189103-201892...    29   4.9  
01_06_1519 + 37942389-37943702,37944142-37944266,37944358-379444...    28   6.5  
12_02_0093 + 13536684-13536782,13537055-13537057,13537626-135376...    28   8.6  
03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,874...    28   8.6  

>07_03_1707 + 28866054-28866065,28866185-28866269,28866398-28867149
          Length = 282

 Score = 34.3 bits (75), Expect = 0.099
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
 Frame = +3

Query: 39  YQKNPEHHKKYKHPGQAGAFEKKN--EKNPGKLREKRFNPYSSDDKPAKQHKVGDKK--- 203
           + K  E  K+ K P QA   EKK   EK P + ++        D+K  ++ K  +KK   
Sbjct: 77  FGKLAEAKKEEKKPDQAKKEEKKQPEEKKPEEKKKSEEEKKKGDEKKPEEGKKEEKKEEK 136

Query: 204 PDIELENGSGTSESSTVVKIDTVN 275
           P ++ E  +  + SST V +   N
Sbjct: 137 PKVKEETKATPAPSSTTVNLQFTN 160


>12_02_1096 +
           26050224-26051058,26051599-26051831,26051940-26052230,
           26052860-26052988,26053082-26053255,26053334-26053547,
           26053881-26053968,26054195-26054239,26056969-26057015,
           26057441-26057727,26057812-26058051,26058141-26058257
          Length = 899

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = +3

Query: 21  KYGEKCYQKNPEHHKKYKHPGQAGAFEKKNEKNPGKLREKRFNPYSSDDKPAKQHKVGDK 200
           K+ +K   K+ EH KK+KH  +  + +K  +K+  K ++K  +  S  D   K H+   K
Sbjct: 806 KHKDKDRDKDKEH-KKHKHRHKDRSKDKDKDKDKDKKKDKSGHHDSGGDHSKKHHEKKRK 864

Query: 201 KPDIE 215
              +E
Sbjct: 865 HEGME 869


>05_01_0601 + 5390484-5391692
          Length = 402

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = -2

Query: 238 DVPDPFSNSMSGFLSPTLCCLAGLSSL 158
           +V D   NS+SG L PTL CLAG+  L
Sbjct: 256 EVLDLSYNSLSGHLPPTLSCLAGIEVL 282


>11_01_0373 + 2826646-2826676,2827010-2827268,2828325-2828415
          Length = 126

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +1

Query: 1   KIRELYANTAKSVIKKIPSTTKNTNIQGKQELLRKKMRRIPESSEKNV 144
           KI EL    AK+ +KK P   KN   + K++  +KK ++  E  E +V
Sbjct: 38  KILELRKKKAKAKVKKKPKKKKNKKAK-KKKKKKKKKKKEEEEEESDV 84


>07_01_0463 + 3502708-3503535
          Length = 275

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +3

Query: 27  GEKCYQKNPEHHKKYKHPGQAGAFEKKNEKNPGKLREKRFNPYSSDDKPAKQHKVGDKKP 206
           G+K  ++  E  K      + G  +K  ++  GK +EK+      D+K  K+ K  DK  
Sbjct: 102 GKKKEKEMKEKKKDKSDKKEEGKKKKDGDEEEGKKKEKK-KDKDGDEKEGKKEKKKDKDG 160

Query: 207 DIELE 221
           D E E
Sbjct: 161 DEEEE 165


>11_06_0087 - 19919224-19922304
          Length = 1026

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +3

Query: 282 HALKLPKNITYYDSSDHSVLKELFLVKMPSDF-YKFFDCLNTDDAIVKICSSVNLELIG- 455
           H  KLP+NIT  D S +S+   L  ++ P       F    T      IC S +L ++  
Sbjct: 614 HIPKLPRNITILDISINSLSGPLPKIQSPKLLSLILFSNHITGTIPESICESQDLFILDL 673

Query: 456 PFELLLGKLPQLD 494
              LL+G+LP+ D
Sbjct: 674 ANNLLVGELPRCD 686


>11_06_0511 - 24434007-24436814
          Length = 935

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 555 QTEIQGDHRKISSALNIILCHLIEV 481
           Q E+QG  R+I S L +ILC L ++
Sbjct: 68  QAELQGRLRRIESELRMILCFLAQI 92


>08_02_0584 - 19010345-19010656,19010959-19011018
          Length = 123

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 22/70 (31%), Positives = 33/70 (47%)
 Frame = +3

Query: 54  EHHKKYKHPGQAGAFEKKNEKNPGKLREKRFNPYSSDDKPAKQHKVGDKKPDIELENGSG 233
           EHHK+ K   +  A E K EK   + +EK     +   KPAK+ K   +K +   E    
Sbjct: 11  EHHKEEKKDKEH-AKEAKPEKEKKEKKEKNGEEAA---KPAKEKKEKKEKKEKGKEKKEK 66

Query: 234 TSESSTVVKI 263
             E++ V K+
Sbjct: 67  VEETTDVAKL 76


>01_05_0265 +
           20188160-20188211,20188291-20189019,20189103-20189231,
           20189857-20189938,20190034-20190166,20190269-20190340,
           20190478-20190573,20190651-20190764,20190838-20191050,
           20191144-20191242,20191328-20191488,20191589-20191685,
           20191828-20191989,20192068-20192148,20192242-20192320,
           20192414-20192550,20192638-20192688,20192776-20192844,
           20193583-20193700,20194142-20194197
          Length = 909

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/71 (22%), Positives = 27/71 (38%)
 Frame = +3

Query: 45  KNPEHHKKYKHPGQAGAFEKKNEKNPGKLREKRFNPYSSDDKPAKQHKVGDKKPDIELEN 224
           + P H  +    G A A +++     G+       P S+DD P       +  P+ +   
Sbjct: 66  ETPPHPGRRTPSGGAAARQQRQNWTGGRFPPTPSTPMSTDDVPLSSEAGDEDTPETDGGG 125

Query: 225 GSGTSESSTVV 257
           G G    +T V
Sbjct: 126 GGGAGADATPV 136


>01_06_1519 +
           37942389-37943702,37944142-37944266,37944358-37944499,
           37944602-37944848,37946139-37946196,37947629-37947913,
           37947988-37948120
          Length = 767

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = +3

Query: 78  PGQAGAFEKKNEKNPGKLREKRFNPYSSDDKPAKQHKVGDKKPDIELENGSGTSESSTVV 257
           P +AG  E K E +  + + +     ++ D+PAK+    +  P  E +      E  TVV
Sbjct: 162 PPEAGTEEPKAEASSEEAKTEEPKAEAAADEPAKEESKAEAAPAEEAKPAEPEPEEKTVV 221


>12_02_0093 +
           13536684-13536782,13537055-13537057,13537626-13537654,
           13539481-13539572,13539979-13540049,13540178-13540266,
           13540896-13541019,13541111-13541394,13541831-13541960,
           13542482-13543111
          Length = 516

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 20/69 (28%), Positives = 29/69 (42%)
 Frame = -3

Query: 216 IRCQVFYLLLYAA*QVCHRSNMD*NVFL*AFRDSSHFFSQKLLLALDVCIFCGARDFFDN 37
           +RC+V Y  L     +   SN   N      R   HF S  L   +D+  F G  D F  
Sbjct: 216 LRCRVNYHALRFKPHIMKISNEIVN----KLRSEGHFMSIHLRFEMDMLAFAGCIDIFTP 271

Query: 36  TFRRICIQF 10
             ++I I++
Sbjct: 272 EEQKILIEY 280


>03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,
            8746665-8746893,8747314-8747420,8747560-8747622,
            8747883-8747983,8748996-8749090,8749330-8749350,
            8749987-8750082,8750188-8750308,8750415-8750570,
            8750679-8750869,8751207-8751478,8751853-8751954,
            8752006-8752038,8752132-8752308,8752397-8752466,
            8752512-8752585,8752667-8752908,8752983-8753129,
            8753526-8753751,8753893-8753970,8754378-8754521,
            8754829-8755008,8755335-8755394,8755484-8755523,
            8758653-8759137
          Length = 1294

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +3

Query: 39   YQKNPEHHKKYKHPGQAGAFEKKNEKNPGKLREK-RFNPYSSDDKPAKQHKVGDKKPDIE 215
            Y+ +  ++ K K PG+ G   +KN    G  +    +       KP  QH +G  + +  
Sbjct: 1113 YEVDGWYYVKKKRPGRDGKTAEKNRLLAGGWQGGYTYTSPKPQPKPGNQHAMGRGEQEAA 1172

Query: 216  LENGSGTSE 242
              +G G+ E
Sbjct: 1173 ASHGFGSME 1181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,215,166
Number of Sequences: 37544
Number of extensions: 341313
Number of successful extensions: 1043
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)