Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9b02
(727 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AM292370-1|CAL23182.1| 418|Tribolium castaneum gustatory recept... 23 1.9
AM292335-1|CAL23147.2| 374|Tribolium castaneum gustatory recept... 23 1.9
AF452568-1|AAL57830.1| 243|Tribolium castaneum homeodomain tran... 23 2.5
AF321227-5|AAK16425.1| 292|Tribolium castaneum Zen2 protein. 23 2.5
AM292340-1|CAL23152.1| 355|Tribolium castaneum gustatory recept... 22 4.4
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 22 5.8
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 22 5.8
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 22 5.8
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 22 5.8
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 22 5.8
>AM292370-1|CAL23182.1| 418|Tribolium castaneum gustatory receptor
candidate 49 protein.
Length = 418
Score = 23.4 bits (48), Expect = 1.9
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 365 VDPLK*LFFNNVLNSLCNFFE 303
V+ L LF N++L+ +C+ FE
Sbjct: 195 VNALDHLFLNDILSDICDKFE 215
>AM292335-1|CAL23147.2| 374|Tribolium castaneum gustatory receptor
candidate 14 protein.
Length = 374
Score = 23.4 bits (48), Expect = 1.9
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 365 VDPLK*LFFNNVLNSLCNFFE 303
V+ L LF N++L+ +C+ FE
Sbjct: 151 VNALDHLFLNDILSDICDKFE 171
>AF452568-1|AAL57830.1| 243|Tribolium castaneum homeodomain
transcription factor Zen2 protein.
Length = 243
Score = 23.0 bits (47), Expect = 2.5
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +3
Query: 534 YSYNSTR-NTLY-FNTIYSNY*NHQKYYS 614
Y +N + N Y +N YSNY N+Q+ +S
Sbjct: 204 YQFNDPQFNFNYQYNQAYSNYNNYQEGFS 232
>AF321227-5|AAK16425.1| 292|Tribolium castaneum Zen2 protein.
Length = 292
Score = 23.0 bits (47), Expect = 2.5
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +3
Query: 534 YSYNSTR-NTLY-FNTIYSNY*NHQKYYS 614
Y +N + N Y +N YSNY N+Q+ +S
Sbjct: 224 YQFNDPQFNFNYQYNQAYSNYNNYQEGFS 252
>AM292340-1|CAL23152.1| 355|Tribolium castaneum gustatory receptor
candidate 19 protein.
Length = 355
Score = 22.2 bits (45), Expect = 4.4
Identities = 16/84 (19%), Positives = 37/84 (44%)
Frame = -3
Query: 347 LFFNNVLNSLCNFFEMKFHIIKCRFGINQNLYGINNNPKIVLIQFIGKFIKFVDGSKIEN 168
LF + + C F H++ C I N++ + ++ + + + F+
Sbjct: 161 LFLLCIYHFFCAFIIFTMHLLFCCAFIFFNMHLLF----LLCLDYFTLHLLFLPCIYYFY 216
Query: 167 KFVIIFN*KLIFFWLNLLIRCIFF 96
IIF L+F+ + +++ CI++
Sbjct: 217 SAFIIFTIHLLFYCVLIILLCIYY 240
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 21.8 bits (44), Expect = 5.8
Identities = 7/30 (23%), Positives = 17/30 (56%)
Frame = -3
Query: 176 IENKFVIIFN*KLIFFWLNLLIRCIFFS*M 87
++ F I + ++++ NL++ C+ S M
Sbjct: 199 VDVTFTIKIRRRTLYYFFNLIVPCVLISSM 228
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 21.8 bits (44), Expect = 5.8
Identities = 7/30 (23%), Positives = 17/30 (56%)
Frame = -3
Query: 176 IENKFVIIFN*KLIFFWLNLLIRCIFFS*M 87
++ F I + ++++ NL++ C+ S M
Sbjct: 199 VDVTFTIKIRRRTLYYFFNLIVPCVLISSM 228
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 21.8 bits (44), Expect = 5.8
Identities = 7/30 (23%), Positives = 17/30 (56%)
Frame = -3
Query: 176 IENKFVIIFN*KLIFFWLNLLIRCIFFS*M 87
++ F I + ++++ NL++ C+ S M
Sbjct: 199 VDVTFTIKIRRRTLYYFFNLIVPCVLISSM 228
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 21.8 bits (44), Expect = 5.8
Identities = 7/30 (23%), Positives = 17/30 (56%)
Frame = -3
Query: 176 IENKFVIIFN*KLIFFWLNLLIRCIFFS*M 87
++ F I + ++++ NL++ C+ S M
Sbjct: 199 VDVTFTIKIRRRTLYYFFNLIVPCVLISSM 228
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 21.8 bits (44), Expect = 5.8
Identities = 7/30 (23%), Positives = 17/30 (56%)
Frame = -3
Query: 176 IENKFVIIFN*KLIFFWLNLLIRCIFFS*M 87
++ F I + ++++ NL++ C+ S M
Sbjct: 199 VDVTFTIKIRRRTLYYFFNLIVPCVLISSM 228
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,610
Number of Sequences: 336
Number of extensions: 2159
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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