Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9a22
(632 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 58 4e-09
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 52 3e-07
10_01_0026 - 351737-353443 31 1.0
12_02_0385 + 18424617-18425594,18426811-18426850,18427581-184276... 29 2.3
07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758 29 3.1
02_05_0624 - 30451032-30451140,30451294-30451409,30451506-304515... 29 3.1
02_05_0448 - 29100674-29100716,29100821-29100902,29101010-291011... 28 5.4
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 28 7.1
11_04_0154 + 14172294-14172459,14172993-14173054,14174781-141748... 27 9.4
05_03_0458 + 14280953-14281866,14281964-14282912 27 9.4
04_03_1002 - 21617339-21617362,21618476-21618565,21618755-216194... 27 9.4
01_06_1124 - 34679205-34680926,34681438-34682811 27 9.4
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 58.4 bits (135), Expect = 4e-09
Identities = 40/109 (36%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
Frame = +3
Query: 309 CYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLM 488
C + +QI E AS Y ++ AYF D V GFAK F +++ EER+HA KL+ Y M
Sbjct: 91 CEAAISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNM 150
Query: 489 RG---KLTGSVTDLITYRAPANTSWESGASALEHALKLESDVTNSIREV 626
RG +L VT L + P A+E AL LE V + +
Sbjct: 151 RGGRVRLQSIVTPLTEFDHPEK---GDALYAMELALALEKLVNEKLHNL 196
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 52.4 bits (120), Expect = 3e-07
Identities = 31/69 (44%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +3
Query: 342 EVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG---KLTGSV 512
E AS Y ++ AYF D V GFAK F +++ EER+HA KLI Y MRG +L V
Sbjct: 134 EYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRLQSIV 193
Query: 513 TDLITYRAP 539
T L + P
Sbjct: 194 TPLTEFDHP 202
>10_01_0026 - 351737-353443
Length = 568
Score = 30.7 bits (66), Expect = 1.0
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +1
Query: 406 APASRSYSSMLRLKNASTRPSSLTTCS*GES*QAP*PTSSRTGPPQTRRGRAAH---QPS 576
+P S S+ +A + SSL+ S +P P +S PP++ G ++ QPS
Sbjct: 4 SPESSPSSANSTTPSAPSPSSSLSKSPSPPSPSSPPPPASTNAPPKSAGGVSSSTQAQPS 63
Query: 577 STPSSWRVTSPTA 615
S SS T+P+A
Sbjct: 64 SESSSESTTTPSA 76
>12_02_0385 +
18424617-18425594,18426811-18426850,18427581-18427636,
18428032-18428151
Length = 397
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 514 PTSSRTGPPQTRRGRAAHQPSSTPSSWRVTSPTASGRSS 630
PTSS T PPQ + G +P++T S PTA+ +S
Sbjct: 43 PTSSSTPPPQRQEG---PRPAATSSLHETAGPTAAESAS 78
>07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758
Length = 223
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +1
Query: 535 PPQTRRGRAAHQPSSTPSSWRVTSPTASGRS 627
PP + R RA PSS PSS ++PTA+G S
Sbjct: 33 PPPSARARARAGPSS-PSSSSPSTPTAAGLS 62
>02_05_0624 -
30451032-30451140,30451294-30451409,30451506-30451580,
30452033-30452093,30452198-30452424
Length = 195
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 369 AMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLL 485
A+ YF + TV P A FF + +RE T L+D LL
Sbjct: 115 ALPKYFQVGTVIEP--ASEFFSSRLTKRERKTTLVDELL 151
>02_05_0448 -
29100674-29100716,29100821-29100902,29101010-29101130,
29101481-29101546,29101628-29101735,29102083-29102148,
29102605-29102633,29102773-29102902
Length = 214
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -1
Query: 290 PLIPDGDGADVTLCSCGRS*GSNESEDSKENSPHLNFSYNHRFFDDTQKN 141
P+I G+ D + C D KE PH RFF+D +KN
Sbjct: 129 PMIDQGEKDDKIIAVCADDPEYRHFRDIKEIPPH-RLQEIRRFFEDYKKN 177
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 502 QAP*PTSSRTGPPQTRRGRAAHQPSSTPSSWRVTSPT 612
Q+P P ++ T P T AA P + PS + SPT
Sbjct: 101 QSPLPPTTTTTTPPTAPVPAAAPPPTAPSPYSAPSPT 137
>11_04_0154 +
14172294-14172459,14172993-14173054,14174781-14174859,
14174964-14175164,14175420-14175610
Length = 232
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 521 HHVQGPRKHVVGERRISPRAR 583
H+ GPR H+ G RR PRAR
Sbjct: 18 HYATGPRTHLPGPRR-KPRAR 37
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 27.5 bits (58), Expect = 9.4
Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Frame = +1
Query: 358 SST*PWGLTS--RSIR*TAPASRSYSSMLRLKNASTRPSSLTTCS*GES*QA---P*PTS 522
S++ +G TS S R AP+ S +S T P SLTT S S + P P
Sbjct: 12 SASSSYGPTSPPSSCRNAAPSPPSSNSTPTSSTTPTVPPSLTTTSSPSSSPSSPPPLPPL 71
Query: 523 SRTGP--PQTRRGRAAHQPSSTPSSWRVTSPTAS 618
T P P T ++H P+ P TSP+AS
Sbjct: 72 QPTPPPLPPTTLSCSSH-PTPPPPPSPTTSPSAS 104
>04_03_1002 -
21617339-21617362,21618476-21618565,21618755-21619432,
21619536-21619772,21619849-21619896,21619995-21620045,
21620301-21620426,21620557-21620697,21621165-21621401,
21622467-21622571,21622812-21622982,21623306-21623380,
21623754-21623936,21624151-21624297,21624365-21624472,
21624605-21624709,21625109-21625213,21625322-21625381,
21625512-21625579,21625876-21625954,21626208-21626267,
21626445-21626498,21626834-21626886,21627405-21627494,
21628265-21628362,21628464-21628852
Length = 1193
Score = 27.5 bits (58), Expect = 9.4
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +1
Query: 463 PSSLTTCS*GES*QAP*PTSSRTGPPQTRRGRAAHQPSSTPSSWRVTSP-TASGRSS 630
PSS ++ + G P +SS G P T AA S+TPSS R T+P +AS R++
Sbjct: 49 PSSSSSAAGGGRPTTP-SSSSAGGRPTTPS--AAFARSTTPSSGRPTTPSSASSRAA 102
>01_06_1124 - 34679205-34680926,34681438-34682811
Length = 1031
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 353 VNPVLSHGGLLLDRYGEPPRLREA 424
+NP + H G ++D G RLREA
Sbjct: 355 INPDVKHFGCIIDMLGRAGRLREA 378
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,054,928
Number of Sequences: 37544
Number of extensions: 343067
Number of successful extensions: 1036
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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