Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9a21
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024793-6|AAF60688.1|  162|Caenorhabditis elegans Hypothetical ...    32   0.43 
Z27078-9|CAA81586.2|  378|Caenorhabditis elegans Hypothetical pr...    31   0.99 
Z27078-4|CAB76843.1|  373|Caenorhabditis elegans Hypothetical pr...    31   0.99 
Z19153-8|CAD45582.1|  378|Caenorhabditis elegans Hypothetical pr...    31   0.99 
AY303580-1|AAP57302.1|  373|Caenorhabditis elegans cell death-re...    31   0.99 
AF220525-1|AAF43008.1|  352|Caenorhabditis elegans DNAse II homo...    31   0.99 
AF003151-11|AAO61426.1|  402|Caenorhabditis elegans Hypothetical...    30   1.7  
AF003151-10|AAK18913.2|  477|Caenorhabditis elegans Hypothetical...    30   1.7  
AC024794-7|AAK68501.3|  279|Caenorhabditis elegans Hypothetical ...    30   1.7  
Z81082-2|CAE17818.1|  124|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF003144-2|AAB54193.2|  217|Caenorhabditis elegans Hypothetical ...    29   4.0  
AF125971-1|AAD14769.2|  469|Caenorhabditis elegans Hypothetical ...    28   5.3  
AL110500-2|CAB60427.2|  281|Caenorhabditis elegans Hypothetical ...    28   7.0  
U80442-3|AAB37665.1|  333|Caenorhabditis elegans Hypothetical pr...    27   9.2  
L13200-8|AAA28188.2|  324|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>AC024793-6|AAF60688.1|  162|Caenorhabditis elegans Hypothetical
           protein Y48G1BL.5 protein.
          Length = 162

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
 Frame = -1

Query: 157 AAVHTSRSHLDCY--DNTGLTIDDTTFNKYVTNLSSYTSSYASANIVLRRTF 8
           AA   + S +  Y  D+  +T+D  T   Y+ ++S+ TSSY+ +++++  TF
Sbjct: 32  AAFSRNNSMISDYKIDSLSVTVDGMTSQAYIDSISTQTSSYSLSSMIVIITF 83


>Z27078-9|CAA81586.2|  378|Caenorhabditis elegans Hypothetical
           protein K04H4.6b protein.
          Length = 378

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -3

Query: 536 NRRAHHVHKKAGFYCRFSKYVFYLFQNYFRFFSPCS 429
           NR++H +H+  G  C + +  ++ F N      PC+
Sbjct: 322 NRQSHQIHRGGGTMCIYDQETYFQFANIISETVPCT 357


>Z27078-4|CAB76843.1|  373|Caenorhabditis elegans Hypothetical
           protein K04H4.6a protein.
          Length = 373

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -3

Query: 536 NRRAHHVHKKAGFYCRFSKYVFYLFQNYFRFFSPCS 429
           NR++H +H+  G  C + +  ++ F N      PC+
Sbjct: 322 NRQSHQIHRGGGTMCIYDQETYFQFANIISETVPCT 357


>Z19153-8|CAD45582.1|  378|Caenorhabditis elegans Hypothetical
           protein K04H4.6b protein.
          Length = 378

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -3

Query: 536 NRRAHHVHKKAGFYCRFSKYVFYLFQNYFRFFSPCS 429
           NR++H +H+  G  C + +  ++ F N      PC+
Sbjct: 322 NRQSHQIHRGGGTMCIYDQETYFQFANIISETVPCT 357


>AY303580-1|AAP57302.1|  373|Caenorhabditis elegans cell
           death-related nuclease 6 protein.
          Length = 373

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -3

Query: 536 NRRAHHVHKKAGFYCRFSKYVFYLFQNYFRFFSPCS 429
           NR++H +H+  G  C + +  ++ F N      PC+
Sbjct: 322 NRQSHQIHRGGGTMCIYDQETYFQFANIISETVPCT 357


>AF220525-1|AAF43008.1|  352|Caenorhabditis elegans DNAse II homolog
           K04H4.6 protein.
          Length = 352

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -3

Query: 536 NRRAHHVHKKAGFYCRFSKYVFYLFQNYFRFFSPCS 429
           NR++H +H+  G  C + +  ++ F N      PC+
Sbjct: 305 NRQSHQIHRGGGTMCIYDQETYFQFANIISETVPCT 340


>AF003151-11|AAO61426.1|  402|Caenorhabditis elegans Hypothetical
           protein D1007.5b protein.
          Length = 402

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = +1

Query: 499 NPAFLCT*CARLFQVWRYKVCTWKRLAESILITATIS 609
           NP FL   C  L   WR  VC WK + E   + ATIS
Sbjct: 88  NPYFLS--CVGLLLGWRVTVCFWKTITE---VIATIS 119


>AF003151-10|AAK18913.2|  477|Caenorhabditis elegans Hypothetical
           protein D1007.5a protein.
          Length = 477

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = +1

Query: 499 NPAFLCT*CARLFQVWRYKVCTWKRLAESILITATIS 609
           NP FL   C  L   WR  VC WK + E   + ATIS
Sbjct: 88  NPYFLS--CVGLLLGWRVTVCFWKTITE---VIATIS 119


>AC024794-7|AAK68501.3|  279|Caenorhabditis elegans Hypothetical
           protein Y48G1BM.9 protein.
          Length = 279

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
 Frame = -1

Query: 157 AAVHTSRSHLDCY--DNTGLTIDDTTFNKYVTNLSSYTSSYASANIVL 20
           AA   + S +  Y  D+  +T+D  T   Y+ ++S+ TSSY+ +++++
Sbjct: 148 AAFSRNNSMISDYKIDSLSVTVDGMTSQAYIDSISTQTSSYSLSSLMI 195


>Z81082-2|CAE17818.1|  124|Caenorhabditis elegans Hypothetical
           protein F42G4.7 protein.
          Length = 124

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 10/33 (30%), Positives = 23/33 (69%)
 Frame = -1

Query: 118 DNTGLTIDDTTFNKYVTNLSSYTSSYASANIVL 20
           D+  +T+D  T   Y+ ++S+ TSSY+ +++++
Sbjct: 8   DSLSVTVDGMTSQAYIDSISTQTSSYSLSSLMI 40


>AF003144-2|AAB54193.2|  217|Caenorhabditis elegans Hypothetical
           protein C55C2.3 protein.
          Length = 217

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 404 YTAHRNLRRNMERKIENNFET-NKIRTSRNDSRTLPFYVHD 523
           YT H +L R +E K  N F+   K+  ++N+S     Y +D
Sbjct: 75  YTIHFHLARQLEEKYMNKFKKYKKLALNKNNSERESGYTYD 115


>AF125971-1|AAD14769.2|  469|Caenorhabditis elegans Hypothetical
           protein Y4C6B.5 protein.
          Length = 469

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +3

Query: 468 IKYVLRETTVEPCLFMYMMCTSISSLAVQSMHLEKACRVNFNYGDDIC 611
           I+Y LR   +E  LF+YM+ + ++    Q++  EK C + +   +  C
Sbjct: 2   IRY-LRMLGMEIPLFLYMLGSYLNYPVFQNLIYEKECLIKYQQNETFC 48


>AL110500-2|CAB60427.2|  281|Caenorhabditis elegans Hypothetical
           protein Y87G2A.2 protein.
          Length = 281

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 509 FYVHDVHVYFKSGGTKYAP 565
           FYVH VH YF  GG +  P
Sbjct: 50  FYVHAVHCYFIRGGEESIP 68


>U80442-3|AAB37665.1|  333|Caenorhabditis elegans Hypothetical
           protein T20F5.4 protein.
          Length = 333

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -1

Query: 145 TSRSHLDCYDNTGLTIDDTTFNKYVTNLSSYTSSYASANIVLRRTF 8
           TS  H + Y+N+  T++ +TF K     +  + S++  N V + +F
Sbjct: 94  TSNRHSNIYENSSTTMNYSTFRKMSLESTHSSVSHSMQNDVEKTSF 139


>L13200-8|AAA28188.2|  324|Caenorhabditis elegans Hypothetical
           protein ZK1236.7 protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/83 (22%), Positives = 32/83 (38%)
 Frame = +2

Query: 416 RNLRRNMERKIENNFETNKIRTSRNDSRTLPFYVHDVHVYFKSGGTKYAPGKGLQSQF*L 595
           RN RR + R  + +   N +     D   L          +   G K    K  + Q   
Sbjct: 86  RNARRRVNRDEQEDGFVNHMMNDGEDVEDLDGGAEQFE--YDEDGKKIGKRKAAKLQAKE 143

Query: 596 RRRYL*PFEIKEHNRTRRRSEQR 664
            +R +  +E++E    +RR E+R
Sbjct: 144 EKRQMREYEVREREERKRREEER 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,570,521
Number of Sequences: 27780
Number of extensions: 249963
Number of successful extensions: 676
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)