Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9a20
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    25   0.91 
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    25   0.91 
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    25   0.91 
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    25   0.91 
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    23   2.1  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    23   2.1  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    23   2.1  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    23   2.1  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    23   2.1  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    23   3.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.7  

>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
 Frame = +2

Query: 215 FSYDNNFCVCSLFFFYNLNEVNNVQCCEFYYYFVFCSV-----VTIKEQCKTIWRMAAAT 379
           ++Y+NN     L+  YN+N +  +      YY  F        ++I+EQ      +  +T
Sbjct: 97  YNYNNNNYNKKLY--YNINYIEQIPIPVPVYYGNFLPRPMGPWISIQEQIPRFRHIGPST 154

Query: 380 PIPMCHRPNSW 412
           P P    PN++
Sbjct: 155 PFPRFIPPNAY 165


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
 Frame = +2

Query: 215 FSYDNNFCVCSLFFFYNLNEVNNVQCCEFYYYFVFCSV-----VTIKEQCKTIWRMAAAT 379
           ++Y+NN     L+  YN+N +  +      YY  F        ++I+EQ      +  +T
Sbjct: 97  YNYNNNNYNKKLY--YNINYIEQIPIPVPVYYGNFLPRPMGPWISIQEQIPRFRHIGPST 154

Query: 380 PIPMCHRPNSW 412
           P P    PN++
Sbjct: 155 PFPRFIPPNAY 165


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
 Frame = +2

Query: 215 FSYDNNFCVCSLFFFYNLNEVNNVQCCEFYYYFVFCSV-----VTIKEQCKTIWRMAAAT 379
           ++Y+NN     L+  YN+N +  +      YY  F        ++I+EQ      +  +T
Sbjct: 97  YNYNNNNYNKKLY--YNINYIEQIPIPVPVYYGNFLPRPMGPWISIQEQIPRFRHIGPST 154

Query: 380 PIPMCHRPNSW 412
           P P    PN++
Sbjct: 155 PFPRFIPPNAY 165


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
 Frame = +2

Query: 215 FSYDNNFCVCSLFFFYNLNEVNNVQCCEFYYYFVFCSV-----VTIKEQCKTIWRMAAAT 379
           ++Y+NN     L+  YN+N +  +      YY  F        ++I+EQ      +  +T
Sbjct: 97  YNYNNNNYNKKLY--YNINYIEQIPIPVPVYYGNFLPRPMGPWISIQEQIPRFRHIGPST 154

Query: 380 PIPMCHRPNSW 412
           P P    PN++
Sbjct: 155 PFPRFIPPNAY 165


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
 Frame = +2

Query: 260 YNLNEVNNVQCCEFYYYFVFC-----SVVTIKEQCKTIWRMAAATPIPMCHRPNSWSI 418
           YN+N +  +      YY  F      S ++I+EQ      +  +TP P    PN++ +
Sbjct: 104 YNINYIEQIPVPVPVYYGNFPPRPMGSWISIQEQIPRFRHIGPSTPFPRFIPPNAYRL 161


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
 Frame = +2

Query: 260 YNLNEVNNVQCCEFYYYFVFC-----SVVTIKEQCKTIWRMAAATPIPMCHRPNSWSI 418
           YN+N +  +      YY  F      S ++I+EQ      +  +TP P    PN++ +
Sbjct: 104 YNINYIEQIPVPVPVYYGNFPPRPMGSWISIQEQIPRFRHIGPSTPFPRFIPPNAYRL 161


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
 Frame = +2

Query: 260 YNLNEVNNVQCCEFYYYFVFC-----SVVTIKEQCKTIWRMAAATPIPMCHRPNSWSI 418
           YN+N +  +      YY  F      S ++I+EQ      +  +TP P    PN++ +
Sbjct: 104 YNINYIEQIPVPVPVYYGNFPPRPMGSWISIQEQIPRFRHIGPSTPFPRFIPPNAYRL 161


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
 Frame = +2

Query: 260 YNLNEVNNVQCCEFYYYFVFC-----SVVTIKEQCKTIWRMAAATPIPMCHRPNSWSI 418
           YN+N +  +      YY  F      S ++I+EQ      +  +TP P    PN++ +
Sbjct: 104 YNINYIEQIPVPVPVYYGNFPPRPMGSWISIQEQIPRFRHIGPSTPFPRFIPPNAYRL 161


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
 Frame = +2

Query: 260 YNLNEVNNVQCCEFYYYFVFC-----SVVTIKEQCKTIWRMAAATPIPMCHRPNSWSI 418
           YN+N +  +      YY  F      S ++I+EQ      +  +TP P    PN++ +
Sbjct: 104 YNINYIEQIPVPVPVYYGNFPPRPMGSWISIQEQIPRFRHIGPSTPFPRFIPPNAYRL 161


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
 Frame = +2

Query: 218 SYDNNFCVCSLFFFYNLNEVNNVQC-------CEFYYYFVFCSVVTIKEQCKTIWRMAAA 376
           +Y+NN+   +   +YN+N +  +         C  +        ++I+EQ      +  +
Sbjct: 96  NYNNNYNNYNKKLYYNINYIEQIPVPVPVPVYCGNFPPRPMGPWISIQEQIPRFRHIGPS 155

Query: 377 TPIPMCHRPNSW 412
           TP P    PN++
Sbjct: 156 TPFPRFISPNAY 167


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 107 TLKSHVTTAKQKVNPGNIPKTNSFV 181
           T++S VTT+K  V+P    + N  V
Sbjct: 267 TIQSSVTTSKMMVSPRLYDRQNGLV 291


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 328 SNNKRTMQNDMENGGGDANTN 390
           +NN     ND  NG G +N N
Sbjct: 247 NNNNNNGANDNGNGNGASNNN 267


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,076
Number of Sequences: 438
Number of extensions: 4007
Number of successful extensions: 24
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)