Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9a19
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      26   5.8  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.7  
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ...    25   7.7  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    25   7.7  
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch...    25   7.7  

>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 313 CF*FTATTRQMYVIHYPIVLFADGSTEIFKTNYNNYLVFIINNFISN 173
           CF +   T +MY+ +Y   L  +G++ + K  +  YLV  I    SN
Sbjct: 820 CFFYVLQTNEMYLANYFQALKTEGTSSV-KIRHAVYLVLQIFGHGSN 865


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 270 CITYICRVVAVNQKQRSNMFSLWNNHFEFPFISNFHKF 383
           C+TY+C  +  N   R N++  W+    F   S++  F
Sbjct: 184 CVTYVCLFLDSNSNPRINVYR-WSKTETFSDASSYITF 220


>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
 Frame = +3

Query: 351 EFPFISNFHKFRYFVFP------RKWLHAFLNIIYLFKIFS 455
           E  F+ N H +R+F         RKW+H F N+  L  + S
Sbjct: 226 EETFLLNRHHYRFFDVGGQRSERRKWIHCFENVTALLFLVS 266


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 224 FKNFGTPICK*YNGIMYYIHLPSRCRKSKTKVKYVF 331
           F++  TP+   Y  +++ + L   CRK KT    VF
Sbjct: 45  FRSPNTPLHTNYQHVLWALKLSRYCRKLKTSPIVVF 80


>SPBC1271.15c |||translation initiation factor
           IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 351 EFPFISNFHKFRYFVFP 401
           +FPF+ N HK  Y + P
Sbjct: 23  KFPFVRNVHKLSYHISP 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,694,368
Number of Sequences: 5004
Number of extensions: 55758
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)