Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9a19
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006617-6|AAF39769.1|  303|Caenorhabditis elegans Hypothetical ...    30   1.8  
U97012-11|AAK39145.2|   63|Caenorhabditis elegans Hypothetical p...    29   2.3  
AC006713-2|AAK68406.1|  310|Caenorhabditis elegans Hypothetical ...    29   4.1  
AF039048-1|AAB94237.2|  480|Caenorhabditis elegans Cell division...    28   7.1  

>AC006617-6|AAF39769.1|  303|Caenorhabditis elegans Hypothetical
           protein C39B5.4 protein.
          Length = 303

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 288 RVVAVNQKQRSNMFSLWNNHFEFPFISNFHKFRYF 392
           ++  ++Q + +  F LWN+ F+  FIS+   F+ F
Sbjct: 187 QITILDQWKNAKKFQLWNSDFDAKFISHLFHFQCF 221


>U97012-11|AAK39145.2|   63|Caenorhabditis elegans Hypothetical
           protein C04E6.3 protein.
          Length = 63

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 369 NFHKFRYFVFPRKWLHAFLNIIYLFKIFSRNFMFQF 476
           N H  R++   +  + AF NI++L+    R+  FQF
Sbjct: 28  NAHNLRFYFREKHGVKAFKNIVFLWLFSIRSLQFQF 63


>AC006713-2|AAK68406.1|  310|Caenorhabditis elegans Hypothetical
           protein Y119D3A.3 protein.
          Length = 310

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 288 RVVAVNQKQRSNMFSLWNNHFEFPFISNFHKFRYFVF 398
           R+  ++Q +++  F+ W++ F+F  I +F  F  F F
Sbjct: 189 RITHLDQWKKAKHFNFWDSWFKFQPIEHFLHFEEFTF 225


>AF039048-1|AAB94237.2|  480|Caenorhabditis elegans Cell division
           cycle related protein25.2 protein.
          Length = 480

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 432 IYLFKIFSRNFMFQFNMAVLNYLCCPKRSCWL-TKTLNMLLKKF 560
           +Y+  +  RNF F  N A +  LC P   C +  K   M LKK+
Sbjct: 330 MYVLDLGYRNFFFAANEANITNLCQPHAYCEMHDKEHTMELKKY 373


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,522,895
Number of Sequences: 27780
Number of extensions: 300265
Number of successful extensions: 708
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)