Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9a19
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    25   0.67 
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    25   0.67 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.0  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   2.7  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    21   8.2  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    21   8.2  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    21   8.2  

>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 88  CKYENDEDIYLIP 126
           C YEND+++YL P
Sbjct: 134 CIYENDKELYLAP 146


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 88  CKYENDEDIYLIP 126
           C YEND+++YL P
Sbjct: 108 CIYENDKELYLAP 120


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 317 PLFLIYGNDSANVCNTLSHCIICR 246
           P  LI GN+        SHC++C+
Sbjct: 175 PPLLIMGNEHTYSETGPSHCVVCQ 198


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 73  RFNLYCKYENDEDIYLIPNYIFNKTIKILSINIHYL 180
           +++ Y  Y N+ + Y   N  +N   K L  NI+Y+
Sbjct: 323 KYSNYNNYNNNYNNYNNYNNNYNNNYKKLYYNINYI 358


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 221 CFKNFGTPICK*YNGIMYYIHLPSRCRK 304
           C KN    I   + G MY+  + ++C K
Sbjct: 98  CLKNSADTISSYFVGKMYFNLIDTKCYK 125


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 221 CFKNFGTPICK*YNGIMYYIHLPSRCRK 304
           C KN    I   + G MY+  + ++C K
Sbjct: 103 CLKNSADTISSYFVGKMYFNLIDTKCYK 130


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 221 CFKNFGTPICK*YNGIMYYIHLPSRCRK 304
           C KN    I   + G MY+  + ++C K
Sbjct: 103 CLKNSADTISSYFVGKMYFNLIDTKCYK 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,467
Number of Sequences: 438
Number of extensions: 3864
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)