Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9a15
         (554 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024878-2|AAK85512.1|  345|Caenorhabditis elegans Hypothetical ...    28   3.9  
Z81502-6|CAB04109.3|  345|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z49887-3|CAC70079.1|  639|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AF068867-1|AAC35506.1|  639|Caenorhabditis elegans putative acti...    27   9.1  

>AC024878-2|AAK85512.1|  345|Caenorhabditis elegans Hypothetical
           protein Y97E10AL.2 protein.
          Length = 345

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -2

Query: 382 LYIIVIDPLVIYLIP-FTQFLFLMLSFLRFQEIEN 281
           L I++  P+++Y +P +TQF+F    FL F+ + N
Sbjct: 21  LSIVIFLPILVYFLPRYTQFIF----FLNFRRLPN 51


>Z81502-6|CAB04109.3|  345|Caenorhabditis elegans Hypothetical
           protein F14B6.6a protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 259 YRQYSQRCFQFLETEEKKALRKE 327
           YR YSQR  +FL  E++  L++E
Sbjct: 19  YRYYSQRTMEFLIEEDQMCLQRE 41


>Z49887-3|CAC70079.1|  639|Caenorhabditis elegans Hypothetical
           protein F09B9.2b protein.
          Length = 639

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/64 (25%), Positives = 26/64 (40%)
 Frame = +1

Query: 13  FSKVPELHIKRLVTAESIHCVLKICKNSKPRSYLKYEYFKTFLCFYCGNVSGVM*YSRSS 192
           FS+ P L +  L+  +      K C     ++  KY +   F C  CG   G   +  + 
Sbjct: 3   FSR-PVLSVNHLILGKKCDVCRKKCSGDVLKANDKYFHINCFQCKKCGRNLGETGFYTTP 61

Query: 193 KNTY 204
           +N Y
Sbjct: 62  ENAY 65


>AF068867-1|AAC35506.1|  639|Caenorhabditis elegans putative
           actin-binding proteinUNC-115 protein.
          Length = 639

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/64 (25%), Positives = 26/64 (40%)
 Frame = +1

Query: 13  FSKVPELHIKRLVTAESIHCVLKICKNSKPRSYLKYEYFKTFLCFYCGNVSGVM*YSRSS 192
           FS+ P L +  L+  +      K C     ++  KY +   F C  CG   G   +  + 
Sbjct: 3   FSR-PVLSVNHLILGKKCDVCRKKCSGDVLKANDKYFHINCFQCKKCGRNLGETGFYTTP 61

Query: 193 KNTY 204
           +N Y
Sbjct: 62  ENAY 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,225,044
Number of Sequences: 27780
Number of extensions: 216952
Number of successful extensions: 549
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)