Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9a13
(718 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos... 29 0.66
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 28 1.2
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 27 2.7
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo... 26 4.7
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 26 4.7
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 6.2
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 25 8.2
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 25 8.2
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc... 25 8.2
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 25 8.2
SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.2
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 25 8.2
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 25 8.2
>SPCC338.07c |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 729
Score = 29.1 bits (62), Expect = 0.66
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +3
Query: 540 KLDYEEKKDVYKQLKKDVDAANKVAEVSRNVKKLKKK 650
+++ EE+K +YK+LKKD+ + AE + K + K
Sbjct: 598 EINEEEEKKIYKKLKKDLSKRLERAEKLKEADKSRAK 634
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/56 (28%), Positives = 31/56 (55%)
Frame = +3
Query: 486 EMVDGNFESELHQAILLSKLDYEEKKDVYKQLKKDVDAANKVAEVSRNVKKLKKKM 653
E++D N +S Q +SK + E KK+V + V+++ ++ V +KLK ++
Sbjct: 489 EVLDLNVKSSREQLQYVSKSNQEHKKEVEALQLQLVNSSTELESVKSENEKLKNEL 544
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 27.1 bits (57), Expect = 2.7
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +3
Query: 477 KDEEMVDGNFESELHQAILLSKLDYEEKKDVYKQLKKDVDAANKVAEVSRNVKKL 641
+ +++V N EL+Q ++D EKKD Y+ + NK+ R KK+
Sbjct: 126 EQQKVVAANAIEELYQKKTALEIDLSEKKDAYEY------SCNKLNSYMRQTKKM 174
>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +3
Query: 537 SKLDYEEKKDVYKQLKKDVDAANKVAEVSRNVKKLKKK 650
SKL+++E + ++ +D++ + VS+ K+ KKK
Sbjct: 660 SKLNHKEPSNPIEERNEDIEPSEASTSVSKKRKQKKKK 697
Score = 25.8 bits (54), Expect = 6.2
Identities = 21/78 (26%), Positives = 38/78 (48%)
Frame = +3
Query: 417 KKKKTKLGESTEAQWAQWKQKDEEMVDGNFESELHQAILLSKLDYEEKKDVYKQLKKDVD 596
KKKK G+ T A+ D +++ +Q ++ LD + K+ + K+ +
Sbjct: 694 KKKKKNSGKLTIE--AEHVSNDSPIINEAPFDYKNQKNFIADLDSDVGKNKFG--KRGFN 749
Query: 597 AANKVAEVSRNVKKLKKK 650
NKV+ RN ++LKK+
Sbjct: 750 PLNKVSLPKRNTRELKKR 767
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 366 EIICLNISVIIPCVAFRSLKM 304
EI C+ +S II C+ F+S K+
Sbjct: 269 EIRCMALSFIISCIRFKSRKL 289
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.8 bits (54), Expect = 6.2
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +3
Query: 498 GNFESELHQAILLSKLDYEEKKDVYKQLKKDVDAANKVAEV 620
G H+++ L ++ +K D+Y+ K A+ VAE+
Sbjct: 2551 GKLYGVYHESVSLLEIQLSDKYDMYQNAKVQESRADAVAEL 2591
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 25.4 bits (53), Expect = 8.2
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +3
Query: 417 KKKKTKLGESTEAQWAQWKQKDEEMVDGNFESELHQAILLSKLDYEEKKDVYKQLKKDV 593
KKK +L + Q + W DEE VD + ++ ++L + E+ D +L D+
Sbjct: 215 KKKALRLRQQQMQQISSWDDVDEE-VDDKRKKRFNKIVVLKHIFTLEELDKTPELLIDL 272
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 25.4 bits (53), Expect = 8.2
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Frame = +3
Query: 525 AILLSKLDYEEKKDVYKQ-LKKDVDAANKV-AEVSRNVKKLKKK 650
A LLS L ++EK +V Q +K+++ K+ E++R + K+ K+
Sbjct: 980 AALLSCLVFQEKSEVENQRMKEELAGPLKILQEMARRIAKVSKE 1023
>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 442
Score = 25.4 bits (53), Expect = 8.2
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +3
Query: 411 AGKKKKTKLGESTEAQWAQWKQKDEEMVDGNFESELHQAILLSKLDYEEKKDVYKQLKKD 590
A +K + + G A AQ K+++EE + A +K E+KK K+ KK
Sbjct: 297 AARKWEREAGAREAAAAAQKKKEEEERRAAEEAAAKASAAAANKKAKEDKKKAQKRDKKV 356
Query: 591 VDAANK 608
V A K
Sbjct: 357 VKNALK 362
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 25.4 bits (53), Expect = 8.2
Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Frame = -1
Query: 679 AVELLQTHHIFFFNFLTLRETSATLFAASTSF--FNCLYTXXXXXXXSLDKRIA*WS--- 515
A L THH +N++T T + +F C + S DK WS
Sbjct: 82 ADSLKWTHH---YNYITQLSEDITQLSWGYNFDLLLCASSYTKLINFSEDKPRLVWSQNR 138
Query: 514 -SDSKLPSTISSSFCF 470
SDS L STISS CF
Sbjct: 139 ISDSFLSSTISSDACF 154
>SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 340
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = -3
Query: 296 YNLVFSNVKLVEFHIFAIQRRVLLLPDYKWFVIL*LTKINDILSYKLY 153
YN +F K +FH IQ + +P W I + +N + L+
Sbjct: 213 YNFMFQKFKPRDFHAQTIQSETMFIPPC-WDTISKIQSVNHEFNIALF 259
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 25.4 bits (53), Expect = 8.2
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = -1
Query: 715 KFYITIFSRIHNAVELLQTHHIFFFNFLTLRETSATLFAASTSFFNCLYT 566
+FY+ +FS+ N T FF+ L + F A T C+ T
Sbjct: 215 QFYLKLFSQKDNVSSSDLTRWFFFYTLLYPWIALVSAFVAETMTLCCIVT 264
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 25.4 bits (53), Expect = 8.2
Identities = 18/77 (23%), Positives = 34/77 (44%)
Frame = +3
Query: 450 EAQWAQWKQKDEEMVDGNFESELHQAILLSKLDYEEKKDVYKQLKKDVDAANKVAEVSRN 629
+AQ A+ + + D F ++H+A + YE+KKD + + +AE R
Sbjct: 245 DAQVAKSRISQTDTWDETFIFDVHRAKEFQIIIYEKKKDFDIPIALILIPTTIIAEELRR 304
Query: 630 VKKLKKKM*CVWSSSTA 680
+ +++ W S A
Sbjct: 305 KRNIQEMSETSWKPSIA 321
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,808,273
Number of Sequences: 5004
Number of extensions: 55889
Number of successful extensions: 135
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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