Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9a13
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   5.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.7  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   8.8  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    21   8.8  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 457 CASVDSPSLVFFFLPAD 407
           C S+   S++ F+LPAD
Sbjct: 246 CVSISYLSVLAFYLPAD 262


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 531 LLSKLDYEEKKDVYKQLKKDV 593
           L ++L Y +  D+YK++KK V
Sbjct: 278 LSTRLFYYQLTDLYKKIKKAV 298


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 528 ILLSKLDYEEKKDVYKQLKKDVDAANKVAEVS 623
           +L+S  D E     YKQ+K D+D   +  E S
Sbjct: 169 LLVSDSDVES----YKQIKSDLDVLRQSVEKS 196


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 528 ILLSKLDYEEKKDVYKQLKKDVDAANKVAEVS 623
           +L+S  D E     YKQ+K D+D   +  E S
Sbjct: 137 LLVSDSDVES----YKQIKSDLDVLRQSVEKS 164


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,586
Number of Sequences: 438
Number of extensions: 3799
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)