Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9a08
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.10 |pcm1||mRNA capping methyltransferase|Schizosaccharom...    29   0.87 
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    27   3.5  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    26   4.7  

>SPCC330.10 |pcm1||mRNA capping
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 389

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +3

Query: 333 GGYAYGELTFPSRTALREHVAGLRGGAGAWGDAVPVLRGGTSPRLALVLDGRQLAHYYLH 512
           GG   G  T P+   + +H+  L+ G   WG+ +  +R   SP  +         ++YL 
Sbjct: 247 GGVMIG--TIPNSDVIVKHIKMLKPGEKEWGNDIYKVRFPESPPRSFRPPYGIQYYFYLE 304

Query: 513 NVIVDV-EYL 539
           + + DV EY+
Sbjct: 305 DAVTDVPEYV 314


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = -1

Query: 425 PPRSRAPAQPRHVLAEGGAARESQLPV---RIAACSRFNHLPVLCALKV 288
           PP S AP+ PR  +     A+   L     R+    + + L VLC  KV
Sbjct: 5   PPPSTAPSSPRRSIQRISDAKNKALTFNRRRLGLIKKAHELSVLCDAKV 53


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
 Frame = +3

Query: 66  ENTAEKVFINRAKR-ILIVSSDGHLAQWRCAPTFESANRYIAGTPIVDQRGGVISVVVAK 242
           +NT    F ++ ++ I  VS DG L  W+ +P F+ A   I      ++    I ++   
Sbjct: 190 KNTVVSGFFSKDQQTIYTVSKDGALFVWKYSPLFQ-AGEVIDEEAEENKTRTHIWLI--- 245

Query: 243 KNNHYAVSSFEGEGGYFESTQNWKVVEPAAGGYAYGELTFPSRTAL 380
           K  HY   + +     F  T N  VV  ++G +   EL  PS T L
Sbjct: 246 KERHYFNQNSKLRCAAFHPTSNLLVVGFSSGLFGIYEL--PSFTML 289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,539,471
Number of Sequences: 5004
Number of extensions: 47903
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)