Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9a08
(713 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0163 + 7320615-7321673 36 0.024
05_03_0645 + 16529635-16529794,16530188-16530312,16531100-165311... 33 0.30
09_04_0258 - 16175258-16176069,16176111-16176414 32 0.52
03_05_0636 - 26307847-26307852,26308331-26308726,26308802-26309461 31 0.69
07_03_1421 - 26451012-26451155,26451256-26451322,26451605-264516... 30 1.6
03_06_0061 + 31352703-31353037,31353145-31353274,31353708-313539... 30 2.1
03_01_0458 - 3521938-3522024,3522133-3522213,3522673-3522806,352... 29 3.7
01_01_0167 + 1422344-1424260,1424338-1424472,1424568-1424990,142... 29 3.7
10_08_1037 - 22477358-22478752 29 4.8
08_02_0468 - 17505905-17506002,17506295-17506424,17506662-175067... 29 4.8
06_01_0116 - 907995-908813,909002-909286 29 4.8
08_01_0323 - 2903700-2903795,2903817-2903916,2904068-2904183,290... 28 6.4
12_02_1041 + 25626210-25626595,25628607-25630542,25630572-25630613 28 8.5
09_06_0120 - 20973635-20974879 28 8.5
07_03_0360 - 17210576-17210959,17212141-17212440 28 8.5
07_01_0597 + 4438858-4439847,4439936-4440067,4440397-4441176,444... 28 8.5
06_03_0310 - 19453047-19453160,19453240-19453338,19453441-194535... 28 8.5
05_03_0650 - 16582296-16583042 28 8.5
04_01_0541 - 6998030-6998521,7000666-7000732,7001057-7001202 28 8.5
03_01_0244 - 1900492-1901109,1901416-1902345 28 8.5
02_05_0040 + 25341418-25341810 28 8.5
>02_02_0163 + 7320615-7321673
Length = 352
Score = 36.3 bits (80), Expect = 0.024
Identities = 23/69 (33%), Positives = 31/69 (44%)
Frame = -1
Query: 395 RHVLAEGGAARESQLPVRIAACSRFNHLPVLCALKVSAFTLEGGDGIVVVFLRHNDGDDA 216
R V A G R S++ VR C F A ++ TL DG+V V R D+
Sbjct: 228 REVAASMGKLRGSRVSVREIQCGEFAVSAQFLAARIPGLTLAVADGLVDVLRRKGFVDEK 287
Query: 215 PALVDDGRA 189
L +DGR+
Sbjct: 288 GFLKNDGRS 296
>05_03_0645 +
16529635-16529794,16530188-16530312,16531100-16531173,
16531961-16532006,16532638-16532730,16534429-16535886
Length = 651
Score = 32.7 bits (71), Expect = 0.30
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 388 TWRGCAGARERGGTPCPCCGGARRRASRWCWTAGSS 495
+WR C+G+R P C +RR W GS+
Sbjct: 486 SWRACSGSRAVAAVAAPGCSSSRRTTGSWSPGTGST 521
>09_04_0258 - 16175258-16176069,16176111-16176414
Length = 371
Score = 31.9 bits (69), Expect = 0.52
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -1
Query: 464 ARRRAPPQHGHGVPPRSRAPAQPRHVLAEGGAARESQLPVRIAA 333
ARR + GHG P + + A+P GG A LPVR+ A
Sbjct: 192 ARRPTDQRRGHGQPEATSSSARPARA---GGGASPPPLPVRVGA 232
>03_05_0636 - 26307847-26307852,26308331-26308726,26308802-26309461
Length = 353
Score = 31.5 bits (68), Expect = 0.69
Identities = 16/30 (53%), Positives = 16/30 (53%)
Frame = +3
Query: 324 PAAGGYAYGELTFPSRTALREHVAGLRGGA 413
PA GGYA TFPS ALRE G A
Sbjct: 27 PAGGGYAGDNATFPSLQALRESSVSQNGMA 56
>07_03_1421 -
26451012-26451155,26451256-26451322,26451605-26451657,
26451736-26451806,26453340-26453482,26453858-26453919,
26454008-26454100,26454203-26454314,26454432-26454547,
26454625-26454787,26454829-26455349,26455429-26455528,
26457472-26457552,26457666-26457877
Length = 645
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +3
Query: 321 EPAAGGYAYGELTFPSRTALREHVAGLRGGAG-AWGDAVPVLRGGTSPRLALVLDGRQLA 497
E AA G G+ + PS H AG RGG G W + + GG + R+ +V R+ A
Sbjct: 4 EAAAPGRTAGKASAPSG----HHHAGARGGGGDLWSEIMASGGGGGAARIGVVYGRRRAA 59
>03_06_0061 +
31352703-31353037,31353145-31353274,31353708-31353902,
31354696-31354725,31355238-31355395,31355756-31355846,
31355924-31355989,31356331-31356413,31356495-31356558,
31356641-31356709,31356798-31356833
Length = 418
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = -1
Query: 464 ARRRAPPQHGHGVPPRSRAPAQPRHVLAEGGAARESQLPV--RIAACSR 324
A R A P H H R R P P A AA E+ LP+ RI +R
Sbjct: 30 APRYAHPHHHHSNSRRRRRPLAPTVYAAAAAAAAEAPLPMPPRIGRATR 78
>03_01_0458 -
3521938-3522024,3522133-3522213,3522673-3522806,
3523189-3523270,3523420-3523692,3523953-3524162,
3524252-3524337,3525197-3525289,3526003-3526227,
3526320-3526930,3529328-3529395,3529491-3529679,
3529773-3529901,3530013-3532484
Length = 1579
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = -1
Query: 425 PPRSRAPAQPRHVLAEGGAARESQLPVRIAACSRFNHLPVLCALK 291
PP A P A+GGAA + +AA R NH L +K
Sbjct: 19 PPSPPAAGHPDAAAADGGAAVRAVCEKALAALQRGNHAKALRVVK 63
>01_01_0167 +
1422344-1424260,1424338-1424472,1424568-1424990,
1425183-1425252,1425356-1425495,1425620-1425679,
1425776-1425931,1426272-1426541
Length = 1056
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = +1
Query: 265 PPSRVKADTLRAHKTGRWLNRLQAAMR 345
P RVKA +KT RWLN L A R
Sbjct: 244 PGQRVKAVNSSVYKTSRWLNGLWKASR 270
>10_08_1037 - 22477358-22478752
Length = 464
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -1
Query: 488 PAVQHQREARRRAPPQHGHGVPPRSR 411
P QHQ R PPQH PP R
Sbjct: 243 PQPQHQHHPHRPLPPQHQQPKPPSMR 268
>08_02_0468 -
17505905-17506002,17506295-17506424,17506662-17506778,
17506881-17506959,17507546-17507654,17507857-17507969,
17510510-17510570,17511562-17511742,17512903-17512960,
17514292-17514497,17514582-17514671,17514752-17514813,
17514911-17514979,17515330-17515334,17516282-17516454
Length = 516
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -1
Query: 194 RAGDVPVRRLEGRRAPPLRQVPVA*-HYQYALGSVYEDLLSSILVESNVGQFLERR 30
+A +P+R R P ++ A HY Y+L S+YE +L I+ S ++RR
Sbjct: 157 KAATMPIRSRGVRWNKPRYELTAALFHYSYSLQSLYESILQEIM-NSAPSNSIQRR 211
>06_01_0116 - 907995-908813,909002-909286
Length = 367
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Frame = -1
Query: 455 RAPPQHGHGVPPRSRAPAQPRHVLAEGGAARESQLPVRIAACSRFNH---LPVLCA 297
R PP+ PP S A A P H + S+ P+ SR +H PVL A
Sbjct: 14 RRPPRAAFSRPPPSLAAAPPHHRAGGAASGYGSRPPLASLLLSRHHHHHQPPVLAA 69
>08_01_0323 -
2903700-2903795,2903817-2903916,2904068-2904183,
2904273-2904561,2905520-2905548,2906154-2906294
Length = 256
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -1
Query: 428 VPPRSRAPAQPRHVLAEGGAARESQLPVRIAACSRFN 318
VPP RA PR A R + R+ AC RF+
Sbjct: 23 VPPPPRAGRAPRGCSRRSAARRRGERLRRVMACERFS 59
>12_02_1041 + 25626210-25626595,25628607-25630542,25630572-25630613
Length = 787
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 476 HQREARRRAPPQHGHGVPPRSRAPAQP 396
H+ EAR R HGH R R A+P
Sbjct: 660 HRVEARHRVAVHHGHAQEHRERQRAEP 686
>09_06_0120 - 20973635-20974879
Length = 414
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 452 APPQHGHGVPPRSRAPAQPR 393
APP+HG G+P R P P+
Sbjct: 244 APPEHGAGLPLRGALPPAPQ 263
>07_03_0360 - 17210576-17210959,17212141-17212440
Length = 227
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 449 PPQHGHGVPPRSRAPAQPRHVLAEGGAA 366
PP + PP R PA+PR GG A
Sbjct: 8 PPSSSNASPPPERPPAKPRGCKDGGGGA 35
>07_01_0597 +
4438858-4439847,4439936-4440067,4440397-4441176,
4441359-4441646,4441710-4441808
Length = 762
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = -1
Query: 263 DGIVVVFLRHNDGDDAPALVDDGRAGDVPVRRLEGRRAPPLRQVPVA 123
DG V+F+R D D+ V R D P+R RR+ P +PVA
Sbjct: 200 DGDSVIFMRRRDDDELYVGVRRQRTLDKPLRT---RRSRPPTPLPVA 243
>06_03_0310 -
19453047-19453160,19453240-19453338,19453441-19453513,
19453598-19453708,19453795-19453956,19454064-19454340,
19454542-19455160,19455256-19455471
Length = 556
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = -1
Query: 467 EARRRAPPQHGHGVPPRSRAPAQPRHVLAEGGAARESQLP 348
+A PPQ PPR+ P P+ L +R SQ P
Sbjct: 177 QAPAPTPPQAPAPTPPRAPTPTPPQAPLPAPSKSRASQAP 216
>05_03_0650 - 16582296-16583042
Length = 248
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = +1
Query: 394 RGCAGARERGGTPCPCCGGARRRASRWCWTAGSSH 498
R AGA TPC CGG R C T SH
Sbjct: 186 RVVAGAARAAATPCASCGGTRFVP---CGTCDGSH 217
>04_01_0541 - 6998030-6998521,7000666-7000732,7001057-7001202
Length = 234
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Frame = -1
Query: 449 PPQHGHGVPPRSRAPAQPR-HVLAEGGAARESQLPVRIAACSRFNHLPVLCA--LKVSAF 279
PP PP R+PA+P GGA+R+ R +CA +
Sbjct: 100 PPSSSSASPPPERSPAKPHGRKEGSGGASRQPAQAARGVTQGGGGGRRHICAALARSGGV 159
Query: 278 TLEGGDGI 255
+ GGDG+
Sbjct: 160 SAGGGDGV 167
>03_01_0244 - 1900492-1901109,1901416-1902345
Length = 515
Score = 27.9 bits (59), Expect = 8.5
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Frame = +3
Query: 249 NHYAVS-SFEGEGGYFESTQNWKVVEPAAGGYAYGELTFPSRTALREHVAG--LRGGAGA 419
NH A F G+ E W+ + A G+ +G + R VAG + GA
Sbjct: 117 NHAAYGLMFHRSIGFAEHGPYWRALRRVAAGHLFGPRQVDAFAPYRARVAGGVVAALRGA 176
Query: 420 WGDAVPVLRG 449
G+A +RG
Sbjct: 177 GGEAAVQVRG 186
>02_05_0040 + 25341418-25341810
Length = 130
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 394 RGCAGARERGGTPCPCCGGARRRASRWCWTAGSS 495
R C+G + R G P C G + R W GSS
Sbjct: 87 RRCSGPQRRRGAPRRRCSGPQLRCGAPRWRHGSS 120
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,974,285
Number of Sequences: 37544
Number of extensions: 431834
Number of successful extensions: 1927
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1921
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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