Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9a06
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1059 + 33815979-33816235,33816467-33816732,33817149-338171...    30   2.0  
12_02_1137 - 26392399-26392613,26392828-26393233                       29   2.7  

>02_05_1059 + 33815979-33816235,33816467-33816732,33817149-33817192,
            33817363-33817539,33817638-33817964,33818067-33818192,
            33818518-33818622,33818815-33820125,33820221-33820382,
            33820416-33820517,33820549-33821272,33821358-33821451,
            33821824-33821986
          Length = 1285

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +2

Query: 536  LTVPARWEDKNLRNYLNKKSIKKYSRWIGGIYDSGDKEWKWG 661
            +TVP RW+D  ++N    + +   +R IG + D  D+E+  G
Sbjct: 1199 ITVP-RWDDTEIKNTKETEILHPRTRSIGYVLDEWDEEYDRG 1239


>12_02_1137 - 26392399-26392613,26392828-26393233
          Length = 206

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 32  RTESRTYRDTLETNNQISNGFLFHENIRVNLLKCCYVSCYSFSLQ 166
           R   R       +N+ +S+G+ F  ++ V L +CC + CY    Q
Sbjct: 32  RRSERVAGSRWSSNSGVSHGWTFVSDLEV-LTRCCMIDCYGGDAQ 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,288,223
Number of Sequences: 37544
Number of extensions: 360122
Number of successful extensions: 958
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)