Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9a06
(698 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92832-3|CAB07372.1| 333|Caenorhabditis elegans Hypothetical pr... 34 0.085
Z79759-3|CAB02136.1| 225|Caenorhabditis elegans Hypothetical pr... 33 0.15
U61946-5|AAC24389.1| 391|Caenorhabditis elegans Hypothetical pr... 33 0.26
U28730-4|AAO38621.1| 228|Caenorhabditis elegans Hypothetical pr... 30 1.4
U28730-3|AAO38622.1| 243|Caenorhabditis elegans Hypothetical pr... 30 1.4
DQ340628-1|ABC65816.1| 228|Caenorhabditis elegans chondroitin p... 30 1.4
U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin rec... 29 2.4
AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-l... 29 2.4
U41109-11|AAB37037.2| 204|Caenorhabditis elegans Hypothetical p... 29 3.2
AF040654-7|AAK21450.2| 362|Caenorhabditis elegans Hypothetical ... 29 4.2
U41556-7|AAP68954.1| 145|Caenorhabditis elegans Hypothetical pr... 28 5.6
U41556-6|AAP68953.1| 248|Caenorhabditis elegans Hypothetical pr... 28 5.6
U41556-5|AAK39193.1| 212|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical pr... 28 7.4
AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical ... 28 7.4
Z99281-19|CAD56260.1| 317|Caenorhabditis elegans Hypothetical p... 27 9.8
Z81038-6|CAB02756.1| 233|Caenorhabditis elegans Hypothetical pr... 27 9.8
U63636-1|AAC47433.1| 500|Caenorhabditis elegans RNA lariat debr... 27 9.8
DQ340627-1|ABC65815.1| 233|Caenorhabditis elegans chondroitin p... 27 9.8
AF099001-6|AAC68738.2| 661|Caenorhabditis elegans Lateral signa... 27 9.8
AC006625-2|AAK68279.2| 500|Caenorhabditis elegans Lariat debran... 27 9.8
>Z92832-3|CAB07372.1| 333|Caenorhabditis elegans Hypothetical
protein F31D4.4 protein.
Length = 333
Score = 34.3 bits (75), Expect = 0.085
Identities = 16/78 (20%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +2
Query: 431 CPPSFIRLGH--SCYFFSDTEATWQKALFACKDRDSNLTVPARWEDKNLRNYLNKKSIKK 604
C PS++ + H SC+ + A + +AL C +++L + E+ ++ +
Sbjct: 20 CAPSWLHIAHLDSCFLSAPQPAEFSEALEYCTQSNASLVIINSEEEASIVREFFARENPS 79
Query: 605 YSRWIGGIYDSGDKEWKW 658
+ WIG +++ +++W
Sbjct: 80 FFNWIGMRWNARAADFQW 97
>Z79759-3|CAB02136.1| 225|Caenorhabditis elegans Hypothetical
protein ZK858.3 protein.
Length = 225
Score = 33.5 bits (73), Expect = 0.15
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +2
Query: 431 CPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSNLTVPARWEDKN-LRNYLNKKSIKKY 607
CP ++R SCYF + KA C D+ + L V E+ + +R++ K +
Sbjct: 78 CPDGWLRYSDSCYFIETESLGFAKAERKCHDKQATLFVANSMEEWDAVRDHAEKSVLS-- 135
Query: 608 SRWIG 622
WIG
Sbjct: 136 --WIG 138
>U61946-5|AAC24389.1| 391|Caenorhabditis elegans Hypothetical
protein F47C12.2 protein.
Length = 391
Score = 32.7 bits (71), Expect = 0.26
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = +2
Query: 413 TKMSYVCPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSNLT-VPARWEDKNLRNYLNK 589
T + CP +IR G CY + +W A+ C+ S L + E++ + + L+K
Sbjct: 42 TDVELTCPDDWIRHGTKCYLPFNIHQSWPFAMTTCQRYGSTLAKIQTGSENQFIASLLSK 101
Query: 590 --KSIKKYSRWIG 622
K + WIG
Sbjct: 102 PGKPTEGKEYWIG 114
>U28730-4|AAO38621.1| 228|Caenorhabditis elegans Hypothetical
protein K10B2.3a protein.
Length = 228
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +2
Query: 431 CPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSNLTVPARWEDKNLRNYLNKKSIKKYS 610
CP +IR SCY+ + KA C ++ S L V ++ +K S +S
Sbjct: 81 CPEGWIRYSDSCYWVETELLGFAKAERKCSEKQSTLFVANSIDEWEAIRGHSKDS---FS 137
Query: 611 RWIG 622
WIG
Sbjct: 138 SWIG 141
>U28730-3|AAO38622.1| 243|Caenorhabditis elegans Hypothetical
protein K10B2.3b protein.
Length = 243
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +2
Query: 431 CPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSNLTVPARWEDKNLRNYLNKKSIKKYS 610
CP +IR SCY+ + KA C ++ S L V ++ +K S +S
Sbjct: 81 CPEGWIRYSDSCYWVETELLGFAKAERKCSEKQSTLFVANSIDEWEAIRGHSKDS---FS 137
Query: 611 RWIG 622
WIG
Sbjct: 138 SWIG 141
>DQ340628-1|ABC65816.1| 228|Caenorhabditis elegans chondroitin
proteoglycan-6 protein.
Length = 228
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +2
Query: 431 CPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSNLTVPARWEDKNLRNYLNKKSIKKYS 610
CP +IR SCY+ + KA C ++ S L V ++ +K S +S
Sbjct: 81 CPEGWIRYSDSCYWVETELLGFAKAERKCSEKQSTLFVANSIDEWEAIRGHSKDS---FS 137
Query: 611 RWIG 622
WIG
Sbjct: 138 SWIG 141
>U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin
receptor protein 2 protein.
Length = 1338
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 407 NSTKMSYVCPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSNLTVP 547
+S + CP + I SCY F T W A C + +S T+P
Sbjct: 44 SSVPATATCPKNSIYYMGSCYVFDTTLRNWNDAALYCNNMNS-ATLP 89
>AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-like
protein LAT-2 protein.
Length = 1338
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 407 NSTKMSYVCPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSNLTVP 547
+S + CP + I SCY F T W A C + +S T+P
Sbjct: 44 SSVPATATCPKNSIYYMGSCYVFDTTLRNWNDAALYCNNMNS-ATLP 89
>U41109-11|AAB37037.2| 204|Caenorhabditis elegans Hypothetical
protein F52E1.2 protein.
Length = 204
Score = 29.1 bits (62), Expect = 3.2
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = +2
Query: 431 CPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSNL-TVPARWEDKNLRNYLNKKSIKKY 607
CP + L CY D T+ A AC + + L T+ + E+ LR + ++
Sbjct: 66 CPTGWQYLNSKCYKKFDAAVTYAGATSACAAQGAELVTIDSFDENDALRKAFDTNALVDE 125
Query: 608 SR--WIGGIYDSGDKEWKW 658
++ WIG SG W+W
Sbjct: 126 TKETWIGLKSLSG--AWQW 142
>AF040654-7|AAK21450.2| 362|Caenorhabditis elegans Hypothetical
protein R06B10.3 protein.
Length = 362
Score = 28.7 bits (61), Expect = 4.2
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Frame = +2
Query: 455 GHSCYFFSDTEATWQKALFACKDRDSN--LTVPARWEDKNLRNYLNKKSIKKYSRWIGGI 628
G CY A++ A AC D +VP+ ++ L N + ++ WIG
Sbjct: 35 GKFCYVVHTGAASFHDAEKACYDYGGYHLASVPSMIDNNFLYNLSSNSNVWANYFWIGLT 94
Query: 629 YDSGDKEWKW--GGELRKMHYQSFS 697
+ D W+W G +L M++ S S
Sbjct: 95 DMTADGSWEWIDGLDLVFMNWASSS 119
>U41556-7|AAP68954.1| 145|Caenorhabditis elegans Hypothetical
protein C25B8.4c protein.
Length = 145
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +2
Query: 431 CPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSNLTV 544
CP ++R SCY+ + ++ +A C ++++ L V
Sbjct: 58 CPDGWVRFSDSCYWIEQHKQSFAEAEKRCYEKNATLFV 95
>U41556-6|AAP68953.1| 248|Caenorhabditis elegans Hypothetical
protein C25B8.4b protein.
Length = 248
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +2
Query: 431 CPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSNLTV 544
CP ++R SCY+ + ++ +A C ++++ L V
Sbjct: 94 CPDGWVRFSDSCYWIEQHKQSFAEAEKRCYEKNATLFV 131
>U41556-5|AAK39193.1| 212|Caenorhabditis elegans Hypothetical
protein C25B8.4a protein.
Length = 212
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +2
Query: 431 CPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSNLTV 544
CP ++R SCY+ + ++ +A C ++++ L V
Sbjct: 58 CPDGWVRFSDSCYWIEQHKQSFAEAEKRCYEKNATLFV 95
>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein
C06B8.7 protein.
Length = 3118
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = +2
Query: 401 QRNSTKMSYVCPPSFIRLGH----SCYFFSDTEATWQKALFACKDRDS 532
+ N++ + CP + + GH SC+ F + T+ +A+ C++ D+
Sbjct: 2689 ESNTSLIEGDCPAGWFQAGHEEFKSCFLFVPSAVTFSRAVEYCEELDA 2736
>Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical
protein T08A11.1 protein.
Length = 1872
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +2
Query: 551 RWEDKNLRNYLNKKSIKKYSRW--IGGIYDSGDKEWKWGGELRKMHYQSF 694
+W++++ +Y+ SI SRW IGG+ D+ + K + R +YQ F
Sbjct: 478 KWKEQSCTHYV---SIILCSRWYAIGGVDDAAKRFMKGACDHRGRYYQDF 524
>AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical
protein T08A11.1 protein.
Length = 1872
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +2
Query: 551 RWEDKNLRNYLNKKSIKKYSRW--IGGIYDSGDKEWKWGGELRKMHYQSF 694
+W++++ +Y+ SI SRW IGG+ D+ + K + R +YQ F
Sbjct: 478 KWKEQSCTHYV---SIILCSRWYAIGGVDDAAKRFMKGACDHRGRYYQDF 524
>Z99281-19|CAD56260.1| 317|Caenorhabditis elegans Hypothetical
protein Y57G11C.38 protein.
Length = 317
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/61 (19%), Positives = 27/61 (44%)
Frame = +2
Query: 395 EAQRNSTKMSYVCPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSNLTVPARWEDKNLR 574
E NST+ C + G SC+F +++ +W + +N++ A +++
Sbjct: 22 ECHANSTEQGKYCSIDKLCAGTSCFFQLNSDNSWSAGCSSTLSSSANISCSAASTSSSIK 81
Query: 575 N 577
+
Sbjct: 82 S 82
>Z81038-6|CAB02756.1| 233|Caenorhabditis elegans Hypothetical
protein C25A1.8 protein.
Length = 233
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = +2
Query: 431 CPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSNLTVPARWEDKNLRNYLNKKSIKKYS 610
CP ++R SCY+ + KA C ++ S L V E+ + + ++ + +
Sbjct: 86 CPDGWLRFADSCYWIEKELLGFAKAERNCFEKQSTLFVANSIEEWDA---IRVQAKEAFF 142
Query: 611 RWIG 622
WIG
Sbjct: 143 SWIG 146
>U63636-1|AAC47433.1| 500|Caenorhabditis elegans RNA lariat
debranching enzyme protein.
Length = 500
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +2
Query: 614 WIGGIYDSGDKEW 652
W GGI D GDKEW
Sbjct: 224 WPGGIPDFGDKEW 236
>DQ340627-1|ABC65815.1| 233|Caenorhabditis elegans chondroitin
proteoglycan-5 protein.
Length = 233
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = +2
Query: 431 CPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSNLTVPARWEDKNLRNYLNKKSIKKYS 610
CP ++R SCY+ + KA C ++ S L V E+ + + ++ + +
Sbjct: 86 CPDGWLRFADSCYWIEKELLGFAKAERNCFEKQSTLFVANSIEEWDA---IRVQAKEAFF 142
Query: 611 RWIG 622
WIG
Sbjct: 143 SWIG 146
>AF099001-6|AAC68738.2| 661|Caenorhabditis elegans Lateral
signaling target protein 2 protein.
Length = 661
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Frame = +3
Query: 309 EIWQIPREDDWLQQPPSY*LSSGLN-----AEAWRRREIAQRCRTCVRLLLSGSD 458
+IW PR DDW+ Y S LN +++ R RC V L D
Sbjct: 6 KIWNKPRPDDWMPLARFYYADSALNDIASELDSFDGRRDPDRCNALVTRLRVAQD 60
>AC006625-2|AAK68279.2| 500|Caenorhabditis elegans Lariat
debranching enzyme relatedprotein 1 protein.
Length = 500
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +2
Query: 614 WIGGIYDSGDKEW 652
W GGI D GDKEW
Sbjct: 224 WPGGIPDFGDKEW 236
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,817,185
Number of Sequences: 27780
Number of extensions: 318877
Number of successful extensions: 925
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -