Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8p13
(657 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21C3.07c |||actin binding methyltransferase |Schizosaccharom... 47 3e-06
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 42 1e-04
SPBC1347.09 |||hexaprenyldihydroxybenzoate methyltransferase|Sch... 40 3e-04
SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr ... 36 0.004
SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|... 36 0.004
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer... 35 0.012
SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr ... 33 0.027
SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr ... 33 0.027
SPAC977.03 |||methyltransferase |Schizosaccharomyces pombe|chr 1... 33 0.027
SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr 3... 32 0.063
SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy... 29 0.59
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 28 1.0
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces... 28 1.0
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 27 1.8
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 27 2.4
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 27 2.4
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 27 3.1
SPBC409.13 |||6,7-dimethyl-8-ribityllumazine synthase |Schizosac... 26 4.2
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 26 4.2
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.2
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 25 7.3
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 25 7.3
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po... 25 7.3
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 25 7.3
SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1 |Schizosaccharo... 25 7.3
SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual 25 7.3
SPCC330.10 |pcm1||mRNA capping methyltransferase|Schizosaccharom... 25 9.6
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 25 9.6
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 25 9.6
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni... 25 9.6
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc... 25 9.6
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz... 25 9.6
>SPBC21C3.07c |||actin binding methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 281
Score = 46.8 bits (106), Expect = 3e-06
Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 5/168 (2%)
Frame = +1
Query: 109 DQYADGKAAKTWNKFIGDSNQRTQNYKDFLIGLLKNNGCKTVLDAACGTGIDSMMLV--- 279
++Y D K KF + Q + + L L ++ G K++L+ CG G ++
Sbjct: 80 ERYWDQFYGKNEGKFFMNRRWIAQEFPELLDLLKEDAGEKSILEIGCGAGNTIWPILKEN 139
Query: 280 -NEGFKVVSVDASDKMLKHALKARWEKRKNPKYDDWVIEEANWETLPQDIETFLPDTQFD 456
N K+ +VD S+K + ++NP YD + W+ D+ + + D
Sbjct: 140 KNSNLKIFAVDYSEKAIDVV-------KQNPLYDAKFCSASVWDLAGSDLLRSIEEASID 192
Query: 457 AVICLGNSFAHLLDEYGDQRMQKLCLSNFAKCLKPGGL-LFIDHRNYD 597
A I L F+ L + Q + N + LKPGGL LF D+ D
Sbjct: 193 A-ITLIFCFSALSPDQWQQ-----AIENLYRLLKPGGLILFRDYGRLD 234
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 41.5 bits (93), Expect = 1e-04
Identities = 24/50 (48%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +1
Query: 172 RTQNYKDFLIGLLKNNGCKTVLDAACGTGIDSMMLVNEGF-KVVSVDASD 318
RT+ Y+DF+ KTVLD CGTGI SM G KV +VD SD
Sbjct: 239 RTEGYRDFVYHNKHIFAGKTVLDVGCGTGILSMFCAKAGAKKVYAVDNSD 288
>SPBC1347.09 |||hexaprenyldihydroxybenzoate
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 284
Score = 39.9 bits (89), Expect = 3e-04
Identities = 34/117 (29%), Positives = 56/117 (47%)
Frame = +1
Query: 229 TVLDAACGTGIDSMMLVNEGFKVVSVDASDKMLKHALKARWEKRKNPKYDDWVIEEANWE 408
++LD ACGTG+ S L ++V +D S M+ ++ K PK + +
Sbjct: 80 SILDFACGTGLISQHLFPYCKQIVGIDVSQDMV-DVYNEKFRKMNIPKERACAYVLSLDD 138
Query: 409 TLPQDIETFLPDTQFDAVICLGNSFAHLLDEYGDQRMQKLCLSNFAKCLKPGGLLFI 579
E F T+FDAV+C ++ H+ D +Q++ + +K LKP G LF+
Sbjct: 139 LDGNGDEPF--STEFDAVVC-SMAYHHIKD------LQEV-TNKLSKLLKPNGRLFV 185
>SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 268
Score = 36.3 bits (80), Expect = 0.004
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +1
Query: 205 LLKNNGCKTVLDAACGTGIDSMMLVNEGFKVVSVDASDKMLKHALKAR 348
LL G +LD CG+GI + + ++G VV +D S ML AL+++
Sbjct: 42 LLDAEGPSFILDIGCGSGISTQIGESQGHVVVGMDISPSMLSVALESQ 89
>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
methyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 271
Score = 36.3 bits (80), Expect = 0.004
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Frame = +1
Query: 133 AKTWNKFIGDS---NQRTQNYKDFLIGLLKNNGC---KTVLDAACGTGIDSMMLVNEGFK 294
AKTW + G S + DF+ + + C K +LD CG GI S + G
Sbjct: 42 AKTWWDWDGGSRLLHLMNSTRLDFMTEVFRERNCFSGKKILDIGCGGGILSESMARLGAS 101
Query: 295 VVSVDASDKMLKHALK 342
V +VDAS ++ A K
Sbjct: 102 VTAVDASPMAIEVAKK 117
>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 34.7 bits (76), Expect = 0.012
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +1
Query: 106 KDQYADGKAAKTWNKFIGDSNQRTQNYKDFLIGLLKNNGCKTVLDAACGTGIDSMMLVNE 285
KD Y D + ++ + + RT +Y+D ++ K VLD CGTGI SM
Sbjct: 16 KDYYFDSYSHWGIHEEMLKDDVRTLSYRDAIMQNPHLFRDKIVLDVGCGTGILSMFCARA 75
Query: 286 GFK-VVSVDASD 318
G K V VD S+
Sbjct: 76 GAKHVYGVDMSE 87
>SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 145
Score = 33.5 bits (73), Expect = 0.027
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +1
Query: 226 KTVLDAACGTGIDSMMLVNEGFKVVSVDASDKMLKHALKARWEKRKNPKYD 378
+ VLDA C ++ L + G+KVV +D S++ + A+ ++ N ++
Sbjct: 11 ENVLDAGCEPNRNARYLASLGYKVVGIDISERAISKAIDKTSSEKSNVNFN 61
>SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 145
Score = 33.5 bits (73), Expect = 0.027
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +1
Query: 226 KTVLDAACGTGIDSMMLVNEGFKVVSVDASDKMLKHALKARWEKRKNPKYD 378
+ VLDA C ++ L + G+KVV +D S++ + A+ ++ N ++
Sbjct: 11 ENVLDAGCEPNRNARYLASLGYKVVGIDISERAISKAIDKTSSEKSNVNFN 61
>SPAC977.03 |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 145
Score = 33.5 bits (73), Expect = 0.027
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +1
Query: 226 KTVLDAACGTGIDSMMLVNEGFKVVSVDASDKMLKHALKARWEKRKNPKYD 378
+ VLDA C ++ L + G+KVV +D S++ + A+ ++ N ++
Sbjct: 11 ENVLDAGCEPNRNARYLASLGYKVVGIDISERAISKAIDKTSSEKSNVNFN 61
>SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 260
Score = 32.3 bits (70), Expect = 0.063
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +1
Query: 232 VLDAACGTGIDSMMLVNEGFKVVSVDASDKMLKHA 336
+LD CG G+ + LV++ +VV +DAS M+K A
Sbjct: 37 LLDLGCGDGVLTNELVSQCRRVVGIDASPDMIKAA 71
>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 357
Score = 29.1 bits (62), Expect = 0.59
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +1
Query: 226 KTVLDAACGTGI-DSMMLVNEGFKVVSVDASDKMLKHALKARWEKRKNPKYDDWVIEEAN 402
+ VL+ G GI D+ + E V ++ +LKH K W R+N ++ E
Sbjct: 187 RRVLNVGFGLGIIDTFLQEKEPSLHVIIEPHPDVLKHMRKNGWMDRENV-----IVYETT 241
Query: 403 WETLPQDI 426
WE DI
Sbjct: 242 WENAINDI 249
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +3
Query: 525 AVSEQLREMPEARRPPVY-RPQE 590
A+ L+EMP++R PP Y RP E
Sbjct: 268 AIELSLKEMPQSREPPSYERPSE 290
>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 684
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/62 (22%), Positives = 31/62 (50%)
Frame = +1
Query: 295 VVSVDASDKMLKHALKARWEKRKNPKYDDWVIEEANWETLPQDIETFLPDTQFDAVICLG 474
+V D ++ +K L + +R + YD+ +IE+ + ++ + D Q + ++ G
Sbjct: 384 LVRTDPRERSIKSMLSDNFLQRSSNNYDNEIIEKVDSANSNKNATNDIKDLQTEEIVEEG 443
Query: 475 NS 480
NS
Sbjct: 444 NS 445
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -2
Query: 410 VSQLASSITQSSYLGFFLFSQRALRACFNILSEASTDTTLNPSFTSIMESIPVPQAASRT 231
V QL +S+ +S +G FL S + R CF SE++ + + P A+S T
Sbjct: 122 VRQLHASLEDASSVGLFLLSLASERVCF---SESANSQEIESIDLGLGSQFGYPIASSNT 178
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2
Query: 560 GFRHFAKLLRHSFCILWSPYSSNKWANEFPRHM 462
GF HF K FCI Y++ K EF RH+
Sbjct: 460 GFEHFKKNSFEQFCI---NYANEKLQQEFYRHV 489
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 560 GFRHFAKLLRHSFCILWSPYSSNKWANEFPRHM 462
GF HF K FCI Y++ K EF +H+
Sbjct: 442 GFEHFEKNSMEQFCI---NYANEKLQQEFNKHV 471
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.6 bits (56), Expect = 3.1
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +1
Query: 187 KDFLIGLLKNNGCKTVLDAACGTGIDSMMLVNEG-FKVVSVDASDK-MLKHALKARWEK 357
K+F+I LK+NG T++ CG G + + + + V ++AS++ ML+ +AR +K
Sbjct: 805 KEFMISTLKHNGYITLM---CGDGTNDVGALKQAHVGVALLNASEEDMLEMQERARNQK 860
>SPBC409.13 |||6,7-dimethyl-8-ribityllumazine synthase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 159
Score = 26.2 bits (55), Expect = 4.2
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +1
Query: 301 SVDASDKMLKHALKARWEKRKNPKYDDWVIEEA--NWETLPQDIETFLPDTQFDAVICLG 474
++ A + ++K A++ EK + K ++ IE +WE LPQ I + +DAVI +G
Sbjct: 28 NLQAIEPLVKGAVETMIEKH-DVKLENIDIESVPGSWE-LPQGIRASIARNTYDAVIGIG 85
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.2 bits (55), Expect = 4.2
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +1
Query: 268 MMLVNEGFKVVSVDASDKMLKHALKARWEKRKNPKYDDWVIEEANWETLPQDIETFLPDT 447
+ LVN ++ SV + ++ LK+ L EKRK KY+ EA T+ D+ + ++
Sbjct: 521 LQLVNSSTELESVKSENEKLKNELVLEIEKRK--KYE---TNEAKITTVATDLSQYYRES 575
Query: 448 Q 450
+
Sbjct: 576 K 576
>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 26.2 bits (55), Expect = 4.2
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = -2
Query: 455 SNWVSGRNVSMSCGSVSQLASSITQSSYLGFFLFSQRALRACFNILSEASTDTTL-NPSF 279
++W N+ S + S + S+ TQSS++ F SQ+ N L + TD L PS
Sbjct: 94 THWARDFNILTSNFASSSVTSAPTQSSHISNFTNSQKYFA---NDLPNSLTDQPLAQPSA 150
Query: 278 TSIMESIPVPQAAS 237
+ +P A S
Sbjct: 151 SQRSTWLPCSAAVS 164
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -2
Query: 575 NRRPPGFRHFAKLLRHSFCILWSPYSSNKWANEFPRHMTA 456
+R P +R AK HS C+L S + ++ + P A
Sbjct: 441 DRLPLHYRVLAKAAEHSICLLQSSIAPDEATKKLPYEFIA 480
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 25.4 bits (53), Expect = 7.3
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +1
Query: 301 SVDASDKML-KHALKARWE-KRKNPKYDDWVIEEANWETLPQDIETFLPDTQFD 456
S D D+ L +H+ + + +++ + +D ++E +W+ QD+E L D D
Sbjct: 582 SYDLPDRNLSEHSYSSSSDDEQRISELNDRELDEIDWQAADQDVENALKDLSDD 635
>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 549
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = -2
Query: 560 GFRHFAKLLRHSFCILWSPYSSNKWANEFPRHMTASNWVSGRNVSMSCGSV 408
GFR +K L H+ ++ SN P++ S+W + + S G++
Sbjct: 218 GFRESSKSLDHTDTSMFMELDSNSDPQFRPKYQAKSSWFAPDDPEASWGNL 268
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 25.4 bits (53), Expect = 7.3
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +2
Query: 353 RRERTPNMMIG*LKKPTGRHSRKTSRRFYQIPSSTPSYVSGTRSPICWMSTETKGCRSCV 532
R++ TP + +KK RH + SR Y++P ST S + W E K R V
Sbjct: 350 RQKSTPYLSF--IKK--ARHLIQVSRDKYKLPISTEEIKPVVYSQVTWTEFEKKLLRYLV 405
>SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 325
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 82 LGIPSEGVKDQYADGKAAKTWNKFIGDSNQRTQNYK 189
+GI S G Y+D K WN F + N+ + K
Sbjct: 287 VGISSSGRAAGYSDEKKQNLWNLFAEEVNRHREIVK 322
>SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 313 SDKMLKHALKARWEKRKNPKYDDWVIEEANWETL 414
SD L+ ++A+W+ K+ +IE N +TL
Sbjct: 102 SDPQLQDGMQAKWDPTDVAKHISQIIERYNIKTL 135
>SPCC330.10 |pcm1||mRNA capping
methyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 389
Score = 25.0 bits (52), Expect = 9.6
Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 6/131 (4%)
Frame = +1
Query: 232 VLDAACGTGIDSMMLVNEGFK-VVSVDASDKMLKHALKARWEKRKNPKYDDWVIEEANWE 408
VLD CG G D + G + +D ++ + A K R+ + + +D + A +
Sbjct: 143 VLDMGCGKGGDLIKWDKAGIDGYIGIDIAEVSVNQA-KKRY-REMHASFD--ALFYAG-D 197
Query: 409 TLPQDIETFLPDTQ--FDAV---ICLGNSFAHLLDEYGDQRMQKLCLSNFAKCLKPGGLL 573
I LP Q FD V C+ +F + ++ L N +KCL GG++
Sbjct: 198 CFSSSINELLPPDQRKFDVVSLQFCMHYAFE-------SEEKVRVLLGNVSKCLPRGGVM 250
Query: 574 FIDHRNYDAMI 606
N D ++
Sbjct: 251 IGTIPNSDVIV 261
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 25.0 bits (52), Expect = 9.6
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = -1
Query: 249 TSGVQNSLAAVVLQETDQEVFVVLRSLITISDELVPCFCRFAVSVLIFYTLGGNTQGT 76
T V +SL V + + V++ SLI + P F R + +FY L GN + T
Sbjct: 601 TERVMHSLMRPVPLDLPHDQKVMIASLIKSA---YPMFSRTNQLICLFYCLTGNEEAT 655
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 25.0 bits (52), Expect = 9.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 373 IWGSFSSPSEL*ERASTSCPKHQPTPL 293
I+ SFSS +L +R S+ H PT L
Sbjct: 28 IFSSFSSSQKLFQRRSSGSITHSPTAL 54
>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
Rad15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 772
Score = 25.0 bits (52), Expect = 9.6
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -1
Query: 78 TRVEYLVRCHNLKCVDTRPLRFCGE 4
T +L ++ +D +PLRFC E
Sbjct: 352 TPTSFLQHVKDITFIDKKPLRFCAE 376
>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 25.0 bits (52), Expect = 9.6
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Frame = +1
Query: 196 LIGLLKNNGCKTVLDAACGTGIDSM-MLVNEGFKVVSVDASDKMLKHALKAR-WEKRKN- 366
+IG++ G + CG I+ + M +S++A + A A +E KN
Sbjct: 199 IIGVIGTAGGTGSVIEFCGEAIEGLSMEARMSMCNMSIEAGARAGMIAPDATTFEYVKNR 258
Query: 367 ---PKYDDWVIEEANWETLPQD 423
PK DDW A W+TL D
Sbjct: 259 PLAPKGDDWEQAVAYWKTLRSD 280
>SPBC839.06 |cta3||P-type ATPase, calcium transporting
Cta3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1037
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/15 (66%), Positives = 14/15 (93%), Gaps = 1/15 (6%)
Frame = +1
Query: 385 VIEEA-NWETLPQDI 426
VI++A NWETLP+D+
Sbjct: 567 VIDKADNWETLPRDV 581
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,017,312
Number of Sequences: 5004
Number of extensions: 67260
Number of successful extensions: 246
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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