Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8p13
(657 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB208106-1|BAE72138.1| 111|Apis mellifera Broad complex zinc fi... 23 1.9
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 23 3.4
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 22 5.9
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 22 5.9
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 22 5.9
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 22 5.9
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 22 5.9
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 22 5.9
DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. 21 7.8
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 21 7.8
AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 21 7.8
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 21 7.8
>AB208106-1|BAE72138.1| 111|Apis mellifera Broad complex zinc
finger domain-Z1 isoform protein.
Length = 111
Score = 23.4 bits (48), Expect = 1.9
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 102 CKRSVR*RQSGKNMEQVHRR**SKNAELQRLLDRSLEEQRLQ 227
CKR S +N + ++ R SKN + ++ +++ E +R Q
Sbjct: 38 CKRVYSSLNSLRNHKSIYHRQHSKNEQQRKEMEQMREREREQ 79
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 22.6 bits (46), Expect = 3.4
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -2
Query: 329 FNILSEASTDTTLNPSFTSIMESIPVPQA 243
+++ + A+ TT+ P F + S+P+P A
Sbjct: 455 YDLGAVATVGTTVAPCFEEPLPSLPLPGA 483
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 21.8 bits (44), Expect = 5.9
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = +1
Query: 70 HSRSLGIPSEGVKDQYADGKAAKTWNKFIGDSNQRTQNYKDFLIGLLKN 216
+SRS + K++ + K +TW + D +R ++ + +I L N
Sbjct: 39 YSRSREREQKSYKNENSYRKYRETWKERSRDRTERERSREPKIISSLSN 87
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.8 bits (44), Expect = 5.9
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = +1
Query: 70 HSRSLGIPSEGVKDQYADGKAAKTWNKFIGDSNQRTQNYKDFLIGLLKN 216
+SRS + K++ + K +TW + D +R ++ + +I L N
Sbjct: 39 YSRSREREQKSYKNENSYRKYRETWKERSRDRTERERSREPKIISSLSN 87
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.8 bits (44), Expect = 5.9
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = +1
Query: 70 HSRSLGIPSEGVKDQYADGKAAKTWNKFIGDSNQRTQNYKDFLIGLLKN 216
+SRS + K++ + K +TW + D +R ++ + +I L N
Sbjct: 39 YSRSREREQKSYKNENSYRKYRETWKERSRDRTERERSREPKIISSLSN 87
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.8 bits (44), Expect = 5.9
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = +1
Query: 70 HSRSLGIPSEGVKDQYADGKAAKTWNKFIGDSNQRTQNYKDFLIGLLKN 216
+SRS + K++ + K +TW + D +R ++ + +I L N
Sbjct: 39 YSRSREREQKSYKNENSYRKYRETWKERSRDRTERERSREPKIISSLSN 87
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 21.8 bits (44), Expect = 5.9
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +1
Query: 256 GIDSMMLVNEGFKVVSVDASDKMLK 330
G+DS EGF +VD ++L+
Sbjct: 388 GLDSQFCTVEGFITAAVDEWPRLLR 412
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 21.8 bits (44), Expect = 5.9
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +1
Query: 256 GIDSMMLVNEGFKVVSVDASDKMLK 330
G+DS EGF +VD ++L+
Sbjct: 441 GLDSQFCTVEGFITAAVDEWPRLLR 465
>DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein.
Length = 630
Score = 21.4 bits (43), Expect = 7.8
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = -1
Query: 630 MPRSGSSVDHRIIVPVVDKQEAAWLQAFREVAQ 532
+P VDH +VP+ ++Q + F + Q
Sbjct: 365 LPSIEKMVDHETMVPLGERQTLMFSATFPDEVQ 397
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.8
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = -1
Query: 195 EVFVVLRSLITISDELVPCFCRFAVSVLIFY 103
E+ + R + + + ++PC +V++L+FY
Sbjct: 206 EIRLRRRPMFYVFNLILPCILINSVALLVFY 236
>AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein.
Length = 602
Score = 21.4 bits (43), Expect = 7.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 562 LASGISRSCSDTASASFGLRTHPTN 488
L+SG+S S S S G+ P+N
Sbjct: 542 LSSGLSISDSTKPETSKGINAEPSN 566
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 21.4 bits (43), Expect = 7.8
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -2
Query: 260 IPVPQAASRTVLQPL 216
+PVPQ T+L P+
Sbjct: 796 VPVPQVNDSTILSPV 810
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,690
Number of Sequences: 438
Number of extensions: 4667
Number of successful extensions: 17
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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