Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8p09
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22176-6|CAA80139.1|  133|Caenorhabditis elegans Hypothetical pr...    79   3e-15
AF067945-1|AAC17679.1|  312|Caenorhabditis elegans Serpentine re...    31   0.83 
AF188751-1|AAF00548.1| 1083|Caenorhabditis elegans tyrosine kina...    29   2.5  
AF078787-11|AAC26948.2| 1083|Caenorhabditis elegans Vegf (vascul...    29   2.5  
Z68317-5|CAA92689.2|  165|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF100306-10|AAC68926.1|  798|Caenorhabditis elegans Hypothetical...    29   3.3  
Z78417-4|CAB01685.2|  531|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>Z22176-6|CAA80139.1|  133|Caenorhabditis elegans Hypothetical
           protein ZK1098.7 protein.
          Length = 133

 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 42/115 (36%), Positives = 68/115 (59%), Gaps = 3/115 (2%)
 Frame = +2

Query: 134 SRLERIGTIFTRVEGLLSRGAMKPDDRPLWFDVYKAFPPITEPKY-ARPNLVVKEIRPIL 310
           +R ER G IF+RV GL+  G +   DRPLW+DVY + PP+T P +  +     + IR I 
Sbjct: 6   TRAERSGNIFSRVTGLIRAGQLNWADRPLWYDVYVSSPPLTPPDWNVKLAKYDEPIRSIF 65

Query: 311 YKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQQYDELKAEG--IPEDEIIE 469
           Y+EDVLRAKF+      A +  ++ S  + +++ + +Y  +K+E     +D++ E
Sbjct: 66  YEEDVLRAKFYKTYRSTAGIQ-VDSSRTSVSQQFINEYKLVKSENAEATDDQLFE 119


>AF067945-1|AAC17679.1|  312|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 31 protein.
          Length = 312

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
 Frame = -3

Query: 322 VFLV*DWSYFFDY--KIRTCIFRFGDWRESFVYIKPQGSVIRFHCSSAKKTFNSGKYCTN 149
           VFL  +W +F +Y  K+  C F F  W     YI       R   S+ K  + SG + + 
Sbjct: 25  VFLTKNWKHFDNYFLKLYICQFFFNMWMYWNFYI-----TSRLPASTCKDCYLSGWFDSL 79

Query: 148 SFQSATGHVKKFFLKLLARLIYVSLMQTNNLFL 50
           S  S +    KFF+       ++  M  +NLFL
Sbjct: 80  SKDSGSMFPFKFFIFC---QYHLGFMSYSNLFL 109


>AF188751-1|AAF00548.1| 1083|Caenorhabditis elegans tyrosine kinase
           receptor T17A3.1 protein.
          Length = 1083

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
 Frame = +2

Query: 212 RPLWFDVYKAFPPITEPKYARPNLVVKEIRPILYKEDVLRAKFHSNGYGL-APVSLLNQS 388
           R +W    KA   I    +  P +   ++R +      L+AK  S    L A  ++    
Sbjct: 329 RCIWKKTGKARQEIEHSLHVSPTIA--QVRILEQSPSFLKAKAGSGSVKLYAKFAVYPAG 386

Query: 389 NETQTKRLVQQYDELKAEGIPEDEIIEKAAQAVAVERHSYAAQKLNVT 532
           N T T R  + Y+ +  EG P DEI+EK   A  +E +S + + L++T
Sbjct: 387 NYTVTWR--RTYNSI--EG-PRDEIVEKGLSATFLE-NSESMEVLDIT 428


>AF078787-11|AAC26948.2| 1083|Caenorhabditis elegans Vegf (vascular
           endothelial growthfactor) receptor family protein 1
           protein.
          Length = 1083

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
 Frame = +2

Query: 212 RPLWFDVYKAFPPITEPKYARPNLVVKEIRPILYKEDVLRAKFHSNGYGL-APVSLLNQS 388
           R +W    KA   I    +  P +   ++R +      L+AK  S    L A  ++    
Sbjct: 329 RCIWKKTGKARQEIEHSLHVSPTIA--QVRILEQSPSFLKAKAGSGSVKLYAKFAVYPAG 386

Query: 389 NETQTKRLVQQYDELKAEGIPEDEIIEKAAQAVAVERHSYAAQKLNVT 532
           N T T R  + Y+ +  EG P DEI+EK   A  +E +S + + L++T
Sbjct: 387 NYTVTWR--RTYNSI--EG-PRDEIVEKGLSATFLE-NSESMEVLDIT 428


>Z68317-5|CAA92689.2|  165|Caenorhabditis elegans Hypothetical
           protein T01H3.5 protein.
          Length = 165

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/72 (22%), Positives = 35/72 (48%)
 Frame = +2

Query: 311 YKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQQYDELKAEGIPEDEIIEKAAQAVA 490
           +K DVLR  F    YG++ + +LN+   ++  +L +  +    + I E+   EK    + 
Sbjct: 3   WKNDVLR--FSGFDYGVSKIRMLNEELHSECDQLSKSNESTSLKDITEEPKDEKLESIIE 60

Query: 491 VERHSYAAQKLN 526
             ++  + ++ N
Sbjct: 61  TAKNKESEKEEN 72


>AF100306-10|AAC68926.1|  798|Caenorhabditis elegans Hypothetical
           protein T24C4.7 protein.
          Length = 798

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +2

Query: 383 QSNETQTKRLVQQYDELKAEGIPEDEIIEKAAQAVAVE-RHSYAAQKLNVTPKNP 544
           +  E +  ++    + +  EG+ E+EI+E +  A++ E    YA  K +  P  P
Sbjct: 694 EEEEEEPNQIPMASEHIDIEGVDEEEIMEHSVNAISEEILFEYADDKRDDGPSTP 748


>Z78417-4|CAB01685.2|  531|Caenorhabditis elegans Hypothetical
           protein C35C5.5 protein.
          Length = 531

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +2

Query: 290 KEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQQYDE 430
           K +RP+    D L+ KF +N   L  V  +NQ   T     +Q YD+
Sbjct: 42  KAVRPVHNASDALKVKFGANLCRLIDVDEVNQVLTTSLWLEMQWYDK 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,073,268
Number of Sequences: 27780
Number of extensions: 243566
Number of successful extensions: 698
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)