Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8p03
         (244 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    25   1.1  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    23   4.3  
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    23   4.3  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    23   7.5  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    22   9.9  

>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -3

Query: 233 TSIQYIFTLILYTSLNYKEKI*KPFFNVYL*SIQHTTSSNIQVDY 99
           +SI Y     +Y + NY +    PF  +Y  SI + + +N Q+ Y
Sbjct: 443 SSINYSTQSPMYYNYNYPQPSFPPFHPIYNDSIGYYSQANPQMYY 487


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 137 IQHTTSSNIQVDYISYF 87
           + H  + NI+ +YISYF
Sbjct: 175 LSHYQNPNIRTEYISYF 191


>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 231

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 167 KPFFNVYL*SIQHTTSSNIQVDYIS 93
           +P FN+Y     HT S N+ +D +S
Sbjct: 65  EPVFNLYSRFSVHTLSHNLVLDNVS 89


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 239 FLTSIQYIFTLILYTSL 189
           F + +QYIF  I+YT++
Sbjct: 690 FTSFVQYIFLSIMYTNV 706


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -3

Query: 182 KEKI*KPFFNVYL*SIQHTTSSNIQVDYISYFFSYLN 72
           K+K+  P F +   +  H TS     +++S  FSY +
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFD 644


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 901,344
Number of Sequences: 5004
Number of extensions: 14262
Number of successful extensions: 23
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 43412082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)